add zenodo api url linting, fix broken zenodo links #2168
Annotations
10 errors and 5 warnings
topics/genome-annotation/tutorials/crispr-screen/tutorial.md#L113
[rdjsonl] reported by reviewdog ๐ถ
Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.
Raw Output:
{"message":"Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":113,"column":196},"end":{"line":113,"column":202}}},"severity":"ERROR","code":{"value":"GTN:005","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn005"},"suggestions":[{"text":"[Something better here]","range":{"start":{"line":113,"column":196},"end":{"line":113,"column":202}}}]}
|
topics/genome-annotation/tutorials/crispr-screen/tutorial.md#L171
[rdjsonl] reported by reviewdog ๐ถ
Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.
Raw Output:
{"message":"Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":171,"column":296},"end":{"line":171,"column":302}}},"severity":"ERROR","code":{"value":"GTN:005","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn005"},"suggestions":[{"text":"[Something better here]","range":{"start":{"line":171,"column":296},"end":{"line":171,"column":302}}}]}
|
topics/genome-annotation/tutorials/crispr-screen/tutorial.md#L277
[rdjsonl] reported by reviewdog ๐ถ
Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.
Raw Output:
{"message":"Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":277,"column":75},"end":{"line":277,"column":81}}},"severity":"ERROR","code":{"value":"GTN:005","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn005"},"suggestions":[{"text":"[Something better here]","range":{"start":{"line":277,"column":75},"end":{"line":277,"column":81}}}]}
|
topics/genome-annotation/tutorials/crispr-screen/tutorial.md#L308
[rdjsonl] reported by reviewdog ๐ถ
Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.
Raw Output:
{"message":"Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":308,"column":170},"end":{"line":308,"column":176}}},"severity":"ERROR","code":{"value":"GTN:005","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn005"},"suggestions":[{"text":"[Something better here]","range":{"start":{"line":308,"column":170},"end":{"line":308,"column":176}}}]}
|
topics/genome-annotation/tutorials/crispr-screen/tutorial.md#L489
[rdjsonl] reported by reviewdog ๐ถ
Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.
Raw Output:
{"message":"Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":489,"column":162},"end":{"line":489,"column":168}}},"severity":"ERROR","code":{"value":"GTN:005","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn005"},"suggestions":[{"text":"[Something better here]","range":{"start":{"line":489,"column":162},"end":{"line":489,"column":168}}}]}
|
topics/genome-annotation/tutorials/crispr-screen/tutorial.md#L566
[rdjsonl] reported by reviewdog ๐ถ
Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.
Raw Output:
{"message":"Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":566,"column":574},"end":{"line":566,"column":580}}},"severity":"ERROR","code":{"value":"GTN:005","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn005"},"suggestions":[{"text":"[Something better here]","range":{"start":{"line":566,"column":574},"end":{"line":566,"column":580}}}]}
|
topics/genome-annotation/tutorials/crispr-screen/tutorial.md#L608
[rdjsonl] reported by reviewdog ๐ถ
Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.
Raw Output:
{"message":"Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":608,"column":45},"end":{"line":608,"column":51}}},"severity":"ERROR","code":{"value":"GTN:005","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn005"},"suggestions":[{"text":"[Something better here]","range":{"start":{"line":608,"column":45},"end":{"line":608,"column":51}}}]}
|
topics/genome-annotation/tutorials/crispr-screen/tutorial.md#L642
[rdjsonl] reported by reviewdog ๐ถ
Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.
Raw Output:
{"message":"Please do not use 'here' as your link title, it is [bad for accessibility](https://usability.yale.edu/web-accessibility/articles/links#link-text). Instead try restructuring your sentence to have useful descriptive text in the link.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":642,"column":45},"end":{"line":642,"column":51}}},"severity":"ERROR","code":{"value":"GTN:005","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn005"},"suggestions":[{"text":"[Something better here]","range":{"start":{"line":642,"column":45},"end":{"line":642,"column":51}}}]}
|
topics/genome-annotation/tutorials/lncrna/tutorial.md#L193
[rdjsonl] reported by reviewdog ๐ถ
You have used the full tool URL to a specific server, here we only need the tool ID portion.
Raw Output:
{"message":"You have used the full tool URL to a specific server, here we only need the tool ID portion.","location":{"path":"./topics/genome-annotation/tutorials/lncrna/tutorial.md","range":{"start":{"line":193,"column":3},"end":{"line":193,"column":103}}},"severity":"ERROR","code":{"value":"GTN:009","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn009"},"suggestions":[{"text":"{% tool [concatenate](.bx.psu.edu/view/bgruening/text_processing/f46f0e4f75c4) %}","range":{"start":{"line":193,"column":3},"end":{"line":193,"column":103}}}]}
|
topics/sequence-analysis/tutorials/ncbi-blast-against-the-madland/tutorial.md#L101
[rdjsonl] reported by reviewdog ๐ถ
Please use the link function to link to other pages within the GTN. It helps us ensure that all links are correct
Raw Output:
{"message":"Please use the link function to link to other pages within the GTN. It helps us ensure that all links are correct","location":{"path":"./topics/sequence-analysis/tutorials/ncbi-blast-against-the-madland/tutorial.md","range":{"start":{"line":101,"column":180},"end":{"line":101,"column":325}}},"severity":"ERROR","code":{"value":"GTN:003","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn003"},"suggestions":[{"text":"{% link .md %}","range":{"start":{"line":101,"column":180},"end":{"line":101,"column":325}}}]}
|
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-python@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
topics/genome-annotation/tutorials/crispr-screen/tutorial.md#L275
[rdjsonl] reported by reviewdog ๐ถ
This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is.
Raw Output:
{"message":"This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":275,"column":3},"end":{"line":275,"column":21}}},"severity":"WARNING","code":{"value":"GTN:020","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn020"},"suggestions":[{"text":"### Count Summary file","range":{"start":{"line":275,"column":3},"end":{"line":275,"column":21}}}]}
|
topics/genome-annotation/tutorials/crispr-screen/tutorial.md#L409
[rdjsonl] reported by reviewdog ๐ถ
This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is.
Raw Output:
{"message":"This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":409,"column":3},"end":{"line":409,"column":20}}},"severity":"WARNING","code":{"value":"GTN:020","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn020"},"suggestions":[{"text":"### Gene Summary file","range":{"start":{"line":409,"column":3},"end":{"line":409,"column":20}}}]}
|
topics/genome-annotation/tutorials/crispr-screen/tutorial.md#L433
[rdjsonl] reported by reviewdog ๐ถ
This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is.
Raw Output:
{"message":"This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":433,"column":3},"end":{"line":433,"column":21}}},"severity":"WARNING","code":{"value":"GTN:020","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn020"},"suggestions":[{"text":"### sgRNA summary file","range":{"start":{"line":433,"column":3},"end":{"line":433,"column":21}}}]}
|
topics/genome-annotation/tutorials/crispr-screen/tutorial.md#L456
[rdjsonl] reported by reviewdog ๐ถ
This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is.
Raw Output:
{"message":"This looks like a heading, but isn't. Please use proper semantic headings where possible. You should check the heading level of this suggestion, rather than accepting the change as-is.","location":{"path":"./topics/genome-annotation/tutorials/crispr-screen/tutorial.md","range":{"start":{"line":456,"column":3},"end":{"line":456,"column":13}}},"severity":"WARNING","code":{"value":"GTN:020","url":"https://github.com/galaxyproject/training-material/wiki/Error-Codes#gtn020"},"suggestions":[{"text":"### PDF report","range":{"start":{"line":456,"column":3},"end":{"line":456,"column":13}}}]}
|
The logs for this run have expired and are no longer available.
Loading