Upgrade develop to GEOS-Chem v14.4.3

[jwallwork23]

Closes #46.

Linked PRs:

• Upgrade develop to GEOS-Chem v14.4.3 geos-chem#11
• Upgrade develop to HEMCO v.3.9.3 (GEOS-Chem v14.4.3) HEMCO#4

My attempt to rebase Lee's updates in #42 on top of develop.

It turns out we do need the environment variables for the compilers. (Commit 3a8e436 tells CMake which compiler(s) to use, fixing an issue @AdelekeBankole and I were having running with Intel compilers.) As such, PR #43 is reverted here.

Checklist

• PR Use MODEL_GISS rather than MODEL_CLASSIC #45 should be merged first.
• Run on CSD3 to check things are working.

Other branches I'm using:

• GEOS-Chem: joe/14.4.3.
• HEMCO: joe/giss-gc-v14.4.3.
• Cloud-J: develop.
• HETP: geoschem/main.

[jwallwork23]

With the latest changes here, I'm able to build the model on CSD3 under the Intel compiler and start the model run. However, I hit the following error in HEMCO setup:

...
HEMCO: Opening /home/jw2423/rds/hpc-work/run/prod_input_files/ExtData/HEMCO/VerticalScaleFactors/v2021-05/gc_layers.nc
 Invalid level standard name:
 ÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌ
 ÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌ
 ÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌ
 ÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌÌ in
 /home/jw2423/rds/hpc-work/run/prod_input_files/ExtData/HEMCO/VerticalScaleFacto
 rs/v2021-05/gc_layers.nc

HEMCO ERROR: Cannot read sigma levels of /home/jw2423/rds/hpc-work/run/prod_in
 put_files/ExtData/HEMCO/VerticalScaleFactors/v2021-05/gc_layers.nc

HEMCO ERROR: Error encountered in routine HCOIO_Read!

HEMCO ERROR: Error in HCOIO_DATAREAD called from HEMCO ReadList_Fill: ENERGY_L
 EVS
 --> LOCATION: ReadList_Fill (HCO_ReadList_Mod.F90)

HEMCO ERROR: Error in ReadList_Fill (1) called from HEMCO ReadList_Read
 --> L
 OCATION: ReadList_Read (HCO_ReadList_Mod.F90)
 Error in ReadList_Read called from hco_run
===============================================================================
GEOS-Chem ERROR: Error encountered in "HCO_Run"!
 -> at HCOI_GC_Run (in module GeosCore/hco_interface_gc_mod.F90)

THIS ERROR ORIGINATED IN HEMCO!  Please check the HEMCO log file for
additional error messages!
===============================================================================

===============================================================================
GEOS-Chem ERROR: Error encountered in "HCOI_GC_Run"!
 -> at Emissions_Run (in module GeosCore/emissions_mod.F90)
===============================================================================

===============================================================================
GEOS-CHEM ERROR: Error encountered in "Emissions_Run", Phase 0

This error can indicate a missing file. Please check the HEMCO log file for
additional error messages!

Does this error look familiar @ltmurray? Might it be because I need to update the ExtData files for v14.4.3 of GEOS-Chem?

[jwallwork23]

With these config files from #51, the model runs!

0NASA/GISS Climate Model (re)started           Year 2016 JUL   1, Hr  0      Internal clock: DTsrc-steps since 1/1/2016      8688
0Restart file written on fort.1                                             Year 2016 JUL   1, Hr  0  Internal clock time:    8688
---------- Main Loop, itime=     8688 day=2016-07-01

...although it does segfault shortly afterwards.

[jwallwork23]

I should note that it's running with SUBDD=''. If I run with SUBDD='CH4:2' then I get

0NASA/GISS Climate Model (re)started           Year 2016 JUL   1, Hr  0      Internal clock: DTsrc-steps since 1/1/2016      8688
 error: variable nacc_taijlh2 is already defined
Abort(1) on node 0 (rank 0 in comm 0): application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0

So #33 still needs addressing.