Add py_to_r converter for anndata.abc._AbstractCSDataset

dynverse · Nov 15, 2024 · 9c6e4e1 · 9c6e4e1
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diff --git a/NEWS.md b/NEWS.md
@@ -2,6 +2,8 @@
 
 * BUG FIX: Use the right interface for the `all.equal()` function.
 
+* BUG FIX: Add `py_to_r` converter for `anndata.abc._AbstractCSDataset` (PR #xxx).
+
 # anndata 0.7.5.5
 
 * FUNCTIONALITY: Added initial support for loading AnnData with `backed=TRUE`.

diff --git a/R/reticulate_conversions.R b/R/reticulate_conversions.R
@@ -100,6 +100,10 @@ py_to_r.scipy.sparse.csc.csc_matrix <- function(x) {
   )
 }
 
+py_to_r.anndata.abc._AbstractCSDataset <- function(x) {
+  py_to_r_ifneedbe(x$to_memory())
+}
+
 # TODO: could add mapping specifically for:
 # * adpy$layers: anndata._core.aligned_mapping.Layers
 # * adpy$obsm: anndata._core.aligned_mapping.AxisArrays