Fix call to available.packages (#52)

* mimic install.packages' calls

* bump version, update NEWS

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: bspm
 Type: Package
 Title: Bridge to System Package Manager
-Version: 0.4.0.1
+Version: 0.4.1
 Authors@R: c(
     person("Iñaki", "Ucar", email="[email protected]",
       role=c("aut", "cph", "cre"), comment=c(ORCID="0000-0001-6403-5550")))

NEWS.md

@@ -1,8 +1,10 @@
-# bspm 0.4.0.1
+# bspm 0.4.1
 
 - New `type="binary-source"` option (or _fast mode_) tries to install as many
   binaries as possible (requested packages and dependencies), and then falls
   back to source installation (per @eddelbuettel's wish).
+- Fix the call to `available.packages()` when the `repos` argument is specified
+  (#52 addressing #51).
 
 # bspm 0.4.0
 

R/integration.R

@@ -50,8 +50,9 @@ enable <- function() {
       type <- "source"
     } else if (type == "both") {
       # get pkgs with non-installed dependencies
-      dbs <- available.packages(type="source")
-      inst <- row.names(installed.packages(.Library.site))
+      dbs <- available.packages(contriburl=contriburl, method=method,
+                                type="source", ...)
+      inst <- row.names(installed.packages(.Library.site, ...))
       pkgs <- tools::package_dependencies(pkgs, dbs, recursive=TRUE)
       pkgs <- lapply(pkgs, function(x) setdiff(x, inst))
       pkgs <- unique(c(names(pkgs), unlist(pkgs, use.names=FALSE)))
@@ -98,7 +99,7 @@ enable <- function() {
     } else if (type == "binary-source") {
       # install as many binaries as possible and fallback to source
       if (length(pkgs <- bspm::install_sys(pkgs))) {
-        inst <- row.names(installed.packages(.Library.site))
+        inst <- row.names(installed.packages(.Library.site, ...))
         deps <- tools::package_dependencies(pkgs, recursive=TRUE)
         deps <- lapply(deps, function(x) setdiff(x, inst))
         deps <- unique(unlist(deps, use.names=FALSE))

cran-comments.md

@@ -1,6 +1,5 @@
-## Minor release
-Enhance integration to imitate the mixed installation mechanism available
-on Windows and macOS.
+## Patch release
+Fixes a bug report.
 
 ## Test environments
 - local R installation, R 4.2.2