Merge pull request #363 from cov-lineages/fix_#362

fix #362
cov-lineages · Jan 28, 2022 · 0ee0b9f · 0ee0b9f
2 parents d66b982 + 6367908
commit 0ee0b9f
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diff --git a/pangolin/__init__.py b/pangolin/__init__.py
@@ -1,5 +1,5 @@
 _program = "pangolin"
-__version__ = "3.1.18"
+__version__ = "3.1.19"
 
 
 __all__ = ["pangolearn",

diff --git a/pangolin/scripts/pangolearn.smk b/pangolin/scripts/pangolearn.smk
@@ -405,7 +405,7 @@ rule usher_to_report:
                             note += f'; scorpio replaced lineage assignment {lineage}'
                             lineage = scorpio_lineage
                         elif not expanded_scorpio_lineage:
-                                note += f'; scorpio replaced lineage assignment {row["lineage"]}'
+                                note += f'; scorpio replaced lineage assignment {lineage}'
                                 lineage = UNASSIGNED_LINEAGE_REPORTED
 
                         if histogram_note: