Update via Issue Milestone Collector

cov-lineages · Feb 5, 2024 · 58bc912 · 58bc912
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diff --git a/scripts/issue-milestone-collector/README.md b/scripts/issue-milestone-collector/README.md
@@ -287,8 +287,10 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO
 `JN.1.11.1` | `B.1.1.529.2.86.1.1.11.1` | [⚑ 410](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/410?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd
 `JN.1.12` | `B.1.1.529.2.86.1.1.12` | [⚑ 410](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/410?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd
 `JN.1.16` | `B.1.1.529.2.86.1.1.16` | [⚑ 410](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/410?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd
+`JN.1.18` | `B.1.1.529.2.86.1.1.18` | [⚑ 390](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/390?closed=1) | [#1089 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd
 `JN.1.2` | `B.1.1.529.2.86.1.1.2` | [⚑ 267](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/267?closed=1) | [#1087](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1087) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1229), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd
 `JN.1.2.1` | `B.1.1.529.2.86.1.1.2.1` | [⚑ 409](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/409?closed=1) | [#1322](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1322) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1229), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1101](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1101) | 2nd
+`JN.1.21` | `B.1.1.529.2.86.1.1.21` | [⚑ 415](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/415?closed=1) | [#1162 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1162) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1058](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1058) | 2nd
 `JN.1.4` | `B.1.1.529.2.86.1.1.4` | [⚑ 378](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/378?closed=1) | [#987](https://github.com/sars-cov-2-variants/lineage-proposals/issues/987) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [Orf6](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Orf6), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd
 `JN.1.4.1` | `B.1.1.529.2.86.1.1.4.1` | [⚑ 408](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/408?closed=1) | [#1175](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1175) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:654](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A654), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd
 `JN.1.4.2` | `B.1.1.529.2.86.1.1.4.2` | [⚑ 839](https://github.com/cov-lineages/pango-designation/milestone/839?closed=1) | [#2462](https://github.com/cov-lineages/pango-designation/issues/2462) |  | main
@@ -300,6 +302,7 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO
 `JN.1.8.1` | `B.1.1.529.2.86.1.1.8.1` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd
 `JN.1.9` | `B.1.1.529.2.86.1.1.9` | [⚑ 833](https://github.com/cov-lineages/pango-designation/milestone/833?closed=1) | [#2410](https://github.com/cov-lineages/pango-designation/issues/2410) |  | main
 `JN.1.9` | `B.1.1.529.2.86.1.1.9` | [⚑ 387](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/387?closed=1) | [#1096](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1096) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:183](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A183), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd
+`JN.1.9.1` | `B.1.1.529.2.86.1.1.9.1` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd
 `JN.10` | `B.1.1.529.2.86.1.10` | [⚑ 234](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/234?closed=1) | [#954 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/954) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [S:475](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A475), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86) | 2nd
 `JN.11` | `B.1.1.529.2.86.1.11` | [⚑ 404](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/404?closed=1) | [#1303 🔵](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1303) | [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike) | 2nd
 `JN.12` | `B.1.1.529.2.86.1.12` | [⚑ 405](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/405?closed=1) | [#1102](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1102) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Apparently slow](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Apparently%20slow), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86) | 2nd
@@ -1336,6 +1339,7 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO
 `XDP` | `XDP` | [⚑ 402](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/402?closed=1) | [#1177](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1177) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [ORF9b](https://github.com/sars-cov-2-variants/lineage-proposals/labels/ORF9b), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike), [XDP](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDP) | 2nd
 `XDQ` | `XDQ` | [⚑ 411](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/411?closed=1) | [#1291](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1291) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [orf8](https://github.com/sars-cov-2-variants/lineage-proposals/labels/orf8), [XDQ](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDQ) | 2nd
 `XDR` | `XDR` | [⚑ 412](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/412?closed=1) | [#1250](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1250) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike), [XDR](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDR) | 2nd
+`XDS` | `XDS` | [⚑ 414](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/414?closed=1) | [#1267](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1267) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86) | 2nd
 `XE` | `XE` | [⚑ 220](https://github.com/cov-lineages/pango-designation/milestone/220?closed=1) | [#454](https://github.com/cov-lineages/pango-designation/issues/454) | https://github.com/cov-lineages/pango-designation/labels/designated | main
 `XF` | `XF` | [⚑ 221](https://github.com/cov-lineages/pango-designation/milestone/221?closed=1) | [#445](https://github.com/cov-lineages/pango-designation/issues/445) | https://github.com/cov-lineages/pango-designation/labels/designated | main
 `XG` | `XG` | [⚑ 223](https://github.com/cov-lineages/pango-designation/milestone/223?closed=1) | [#447](https://github.com/cov-lineages/pango-designation/issues/447) | https://github.com/cov-lineages/pango-designation/labels/designated | main

diff --git a/scripts/issue-milestone-collector/data/mappings.json b/scripts/issue-milestone-collector/data/mappings.json
@@ -3427,6 +3427,18 @@
       "unaliased": "B.1.1.529.2.86.1.1.16"
     }
   ],
+  "B.1.1.529.2.86.1.1.18": [
+    {
+      "pango": "JN.1.18",
+      "repo": "sars-cov-2-variants/lineage-proposals",
+      "milestone": 390,
+      "issue": 1089,
+      "labels": "Multiple lineages, S:346, partially designated, JN.1",
+      "state": "OPEN",
+      "reason": null,
+      "unaliased": "B.1.1.529.2.86.1.1.18"
+    }
+  ],
   "B.1.1.529.2.86.1.1.2": [
     {
       "pango": "JN.1.2",
@@ -3451,6 +3463,18 @@
       "unaliased": "B.1.1.529.2.86.1.1.2.1"
     }
   ],
+  "B.1.1.529.2.86.1.1.21": [
+    {
+      "pango": "JN.1.21",
+      "repo": "sars-cov-2-variants/lineage-proposals",
+      "milestone": 415,
+      "issue": 1162,
+      "labels": "To be proposed, Multiple lineages, designated, BA.2.86, JN.1, S:1058",
+      "state": "OPEN",
+      "reason": null,
+      "unaliased": "B.1.1.529.2.86.1.1.21"
+    }
+  ],
   "B.1.1.529.2.86.1.1.4": [
     {
       "pango": "JN.1.4",
@@ -3577,6 +3601,18 @@
       "unaliased": "B.1.1.529.2.86.1.1.9"
     }
   ],
+  "B.1.1.529.2.86.1.1.9.1": [
+    {
+      "pango": "JN.1.9.1",
+      "repo": "sars-cov-2-variants/lineage-proposals",
+      "milestone": 389,
+      "issue": 1097,
+      "labels": "To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1",
+      "state": "OPEN",
+      "reason": null,
+      "unaliased": "B.1.1.529.2.86.1.1.9.1"
+    }
+  ],
   "B.1.1.529.2.86.1.10": [
     {
       "pango": "JN.10",
@@ -15907,6 +15943,18 @@
       "unaliased": "XDR"
     }
   ],
+  "XDS": [
+    {
+      "pango": "XDS",
+      "repo": "sars-cov-2-variants/lineage-proposals",
+      "milestone": 414,
+      "issue": 1267,
+      "labels": "recombinant, S:456, designated, BA.2.86",
+      "state": "CLOSED",
+      "reason": "COMPLETED",
+      "unaliased": "XDS"
+    }
+  ],
   "XE": [
     {
       "pango": "XE",

diff --git a/scripts/issue-milestone-collector/data/mappings.tsv b/scripts/issue-milestone-collector/data/mappings.tsv
@@ -286,8 +286,10 @@ JN.1.11	sars-cov-2-variants/lineage-proposals	400	1262	designated, S:455, JN.1,
 JN.1.11.1	sars-cov-2-variants/lineage-proposals	410	1253	S:456, Multiple lineages, designated, S:455, partially designated, JN.1	OPEN		B.1.1.529.2.86.1.1.11.1
 JN.1.12	sars-cov-2-variants/lineage-proposals	410	1253	S:456, Multiple lineages, designated, S:455, partially designated, JN.1	OPEN		B.1.1.529.2.86.1.1.12
 JN.1.16	sars-cov-2-variants/lineage-proposals	410	1253	S:456, Multiple lineages, designated, S:455, partially designated, JN.1	OPEN		B.1.1.529.2.86.1.1.16
+JN.1.18	sars-cov-2-variants/lineage-proposals	390	1089	Multiple lineages, S:346, partially designated, JN.1	OPEN		B.1.1.529.2.86.1.1.18
 JN.1.2	sars-cov-2-variants/lineage-proposals	267	1087	designated, BA.2.86, S:1229, JN.1	CLOSED	COMPLETED	B.1.1.529.2.86.1.1.2
 JN.1.2.1	sars-cov-2-variants/lineage-proposals	409	1322	designated, S:1229, JN.1, S:1101	CLOSED	COMPLETED	B.1.1.529.2.86.1.1.2.1
+JN.1.21	sars-cov-2-variants/lineage-proposals	415	1162	To be proposed, Multiple lineages, designated, BA.2.86, JN.1, S:1058	OPEN		B.1.1.529.2.86.1.1.21
 JN.1.4	sars-cov-2-variants/lineage-proposals	378	987	Multiple lineages, designated, S:455, BA.2.86, Orf6, JN.1	CLOSED	COMPLETED	B.1.1.529.2.86.1.1.4
 JN.1.4.1	sars-cov-2-variants/lineage-proposals	408	1175	designated, S:654, BA.2.86, JN.1	CLOSED	COMPLETED	B.1.1.529.2.86.1.1.4.1
 JN.1.4.2	cov-lineages/pango-designation	839	2462		CLOSED	COMPLETED	B.1.1.529.2.86.1.1.4.2
@@ -299,6 +301,7 @@ JN.1.7	sars-cov-2-variants/lineage-proposals	389	1097	To be proposed, Multiple l
 JN.1.8.1	sars-cov-2-variants/lineage-proposals	389	1097	To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1	OPEN		B.1.1.529.2.86.1.1.8.1
 JN.1.9	cov-lineages/pango-designation	833	2410		CLOSED	COMPLETED	B.1.1.529.2.86.1.1.9
 JN.1.9	sars-cov-2-variants/lineage-proposals	387	1096	designated, BA.2.86, S:183, JN.1	CLOSED	COMPLETED	B.1.1.529.2.86.1.1.9
+JN.1.9.1	sars-cov-2-variants/lineage-proposals	389	1097	To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1	OPEN		B.1.1.529.2.86.1.1.9.1
 JN.10	sars-cov-2-variants/lineage-proposals	234	954	Multiple lineages, designated, partially designated, S:475, BA.2.86	OPEN		B.1.1.529.2.86.1.10
 JN.11	sars-cov-2-variants/lineage-proposals	404	1303	S:455, partially designated, BA.2.86, S:1104, JN.1 Spike	OPEN	REOPENED	B.1.1.529.2.86.1.11
 JN.12	sars-cov-2-variants/lineage-proposals	405	1102	S:456, Apparently slow, designated, BA.2.86	CLOSED	COMPLETED	B.1.1.529.2.86.1.12
@@ -1335,6 +1338,7 @@ XDP	cov-lineages/pango-designation	836	2451		CLOSED	COMPLETED	XDP
 XDP	sars-cov-2-variants/lineage-proposals	402	1177	recombinant, designated, ORF9b, JN.1, JN.1 Spike, XDP	CLOSED	COMPLETED	XDP
 XDQ	sars-cov-2-variants/lineage-proposals	411	1291	recombinant, Emerged in an undersampled area, designated, BA.2.86, orf8, XDQ	CLOSED	COMPLETED	XDQ
 XDR	sars-cov-2-variants/lineage-proposals	412	1250	recombinant, designated, JN.1, JN.1 Spike, XDR	CLOSED	COMPLETED	XDR
+XDS	sars-cov-2-variants/lineage-proposals	414	1267	recombinant, S:456, designated, BA.2.86	CLOSED	COMPLETED	XDS
 XE	cov-lineages/pango-designation	220	454	designated	CLOSED	COMPLETED	XE
 XF	cov-lineages/pango-designation	221	445	designated	CLOSED	COMPLETED	XF
 XG	cov-lineages/pango-designation	223	447	designated	CLOSED	COMPLETED	XG