0.6.0

Reslease 0.6

Building elf documentation, implementing segmentation stitching functionality an dbug fixes.

What's Changed

• Metric visualization by @constantinpape in #105
• Add scripts for metric visualization per object by @anwai98 in #104
• Update legacy editable install for elf by @anwai98 in #103
• Fix issues and add doc strings in tracking functionality by @constantinpape in #107
• Fix parallel.label and add documentation strings by @constantinpape in #108
• Add label stitching functionality by @anwai98 in #106
• Update doc strings by @constantinpape in #109
• Build documentation by @constantinpape in #110
• Bump version to 06 by @constantinpape in #112

Full Changelog: 0.5.2...0.6.0

0.5.2

What's Changed

• Fix issues in parallel processing code by @constantinpape in #100

Full Changelog: 0.5.1...0.5.2

0.5.1

What's Changed

• Use zarr over z5py by @JonasHell in #92
• Minor typo in msa docstring by @anwai98 in #95
• Update to io files by @constantinpape in #96
• Improve elf.paralel and misc changes by @constantinpape in #97
• Update version.py by @constantinpape in #98

New Contributors

• @JonasHell made their first contribution in #92

Full Changelog: 0.5.0...0.5.1

0.5.0

What's Changed

• Implement tracking based on motile by @constantinpape in #82
• Parallel distance transform implementation by @constantinpape in #84
• Refactor tracking so that utility functionality can be used independe… by @constantinpape in #86
• Start implementing nifti file wrapper by @constantinpape in #79
• Fix Loading Nifti data by @anwai98 in #87

New Contributors

• @anwai98 made their first contribution in #87

Full Changelog: 0.4.8...0.5.0

0.4.8

What's Changed

• Implement parallel seeded watershed by @constantinpape in #73
• Hotfix mean_average_precision by @constantinpape in #74
• Make the image stack wrapper and knossos wrapper iterable by @constantinpape in #76
• Use threadctl to set numpy thread limits in scope by @constantinpape in #77
• Raise errors for not thread-safe acces in elf.parallel by @constantinpape in #78

Full Changelog: 0.4.7...0.4.8

Segmentation stitching

What's Changed

• Add CLI for viewing hdf5 etc containers by @constantinpape in #69
• Extend paralle.size_filter functionality to also relabel the result. by @constantinpape in #70
• Update mrc_wrapper.py by @martinschorb in #67
• Make running napari in view_container optional by @constantinpape in #71
• Implement segmentation stitching by @constantinpape in #72

Full Changelog: 0.4.6...0.4.7

0.4.6

What's Changed

• Naive tracking by @constantinpape in #61
• Add vis functionality for simple grid views by @constantinpape in #63
• Two pass ws by @constantinpape in #64
• Improve and extend parallel functionality by @constantinpape in #65
• Fix ci by @constantinpape in #66

Full Changelog: 0.4.5...0.4.6

Add ngff transformation functionality

What's Changed

• Add support for ngff transformations by @constantinpape in #59

Full Changelog: 0.4.4...0.4.5

Add htm visualization functionality

What's Changed

• fixed computation of scores for non-continuous label ids by @k-dominik in #55
• Implement plate visualization for htm by @constantinpape in #56
• Htm by @constantinpape in #57
• Add parser for simple htm layout by @constantinpape in #58

Full Changelog: 0.4.3...0.4.4

Fix mrc issues

What's Changed

• fix mrc import axes by @martinschorb in #52

New Contributors

• @martinschorb made their first contribution in #52

Full Changelog: 0.4.2...0.4.3