Update benchmark

biotite-dev · Aug 24, 2024 · 089a8c2 · 089a8c2
1 parent 42aa36f
commit 089a8c2
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Showing 3 changed files with 244 additions and 357 deletions.
diff --git a/benchmark.py b/benchmark.py
@@ -5,8 +5,8 @@
 import matplotlib.ticker as ticker
 import numpy as np
 import biotite.database.rcsb as rcsb
-import biotite.structure.info as info
 import biotite.structure.io.pdb as pdb
+from biotite.structure.info.ccd import get_ccd
 import fastpdb
 
 
@@ -17,7 +17,7 @@
 
 # Call this function before the benchmark
 # to avoid a bias due to the initial loading time
-info.bond_dataset()
+get_ccd()
 
 
 pdb_file_path = rcsb.fetch(PDB_ID, "pdb", tempfile.gettempdir())