feature/DEVSU-2532 Copy number images key update

README.md

@@ -152,6 +152,14 @@ sequence by running this SQL command after the insert:
 Otherwise, you will get a unique constraint error when inserting via the API because Sequelize will try use an id
 that is now taken.
 
+## Adding new image types
+
+Steps to add a new image type:
+1. Open file app/routes/report/images.js
+2. Add new object to IMAGES_CONFIG. Pattern will be the regex for the image key being uploaded
+3. Open file app/constants.js
+4. Add new entry to VALID_IMAGE_KEY_PATTERN based on the IMAGES_CONFIG pattern
+
 ## Process Manager
 
 The production installation of IPR is run & managed by [pm2](http://pm2.keymetrics.io/)

app/constants.js

@@ -39,6 +39,7 @@ module.exports = {
     'scpPlot',
     'msi.scatter',
     'pathwayAnalysis.legend',
+    'copyNumber(.*)',
   ].map((patt) => {
     return `(${patt})`;
   }).join('|')}$`,

app/routes/report/images.js

@@ -176,6 +176,66 @@ const IMAGES_CONFIG = [
     height: 450,
     format: 'PNG',
   },
+  {
+    pattern: 'copyNumberChr(1|2)',
+    width: 1625,
+    height: 875,
+    format: 'PNG',
+  },
+  {
+    pattern: 'copyNumberChr(3|4|5)',
+    width: 1300,
+    height: 875,
+    format: 'PNG',
+  },
+  {
+    pattern: 'copyNumberChr(6|7|X)',
+    width: 1150,
+    height: 875,
+    format: 'PNG',
+  },
+  {
+    pattern: 'copyNumberChr(8|9)',
+    width: 1100,
+    height: 875,
+    format: 'PNG',
+  },
+  {
+    pattern: 'copyNumberChr(10|11|12|13|14)',
+    width: 1000,
+    height: 1000,
+    format: 'PNG',
+  },
+  {
+    pattern: 'copyNumberChr15',
+    width: 1000,
+    height: 1150,
+    format: 'PNG',
+  },
+  {
+    pattern: 'copyNumberChr(16|17|18)',
+    width: 900,
+    height: 1150,
+    format: 'PNG',
+  },
+  {
+    pattern: 'copyNumberChr(19|20|Y)',
+    width: 700,
+    height: 1150,
+    format: 'PNG',
+  },
+  {
+    pattern: 'copyNumberChr(21|22)',
+    width: 550,
+    height: 1150,
+    format: 'PNG',
+  },
+  {
+    pattern: 'copyNumberLegend',
+    width: 300,
+    height: 1150,
+    format: 'PNG',
+  },
 ];
 
 /**