Merge branch 'develop' into feature/DEVSU-2521-add-post-endpoint-genes

bcgsc · Dec 3, 2024 · 2656bd9 · 2656bd9
2 parents d56317c + 3b13380
commit 2656bd9
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Showing 5 changed files with 21 additions and 6 deletions.
diff --git a/app/models/reports/report.js b/app/models/reports/report.js
@@ -26,9 +26,9 @@ module.exports = (sequelize, Sq) => {
       field: 'hrdetect_score',
       type: Sq.FLOAT,
     },
-    intersectTmbScore: {
-      name: 'intersectTmbScore',
-      field: 'intersect_tmb_score',
+    genomeTmb: {
+      name: 'genomeTmb',
+      field: 'genome_tmb',
       type: Sq.FLOAT,
     },
     alternateIdentifier: {

diff --git a/migrations/20241129212739-DEVSU-2513-rename-tbm-score.js b/migrations/20241129212739-DEVSU-2513-rename-tbm-score.js
@@ -0,0 +1,15 @@
+const TABLE = 'reports';
+
+module.exports = {
+  up: (queryInterface) => {
+    return queryInterface.sequelize.transaction(async (transaction) => {
+      return Promise.all([
+        queryInterface.renameColumn(TABLE, 'intersect_tmb_score', 'genome_tmb', {transaction}),
+      ]);
+    });
+  },
+
+  down: () => {
+    throw new Error('Not Implemented!');
+  },
+};
diff --git a/test/routes/report/report.test.js b/test/routes/report/report.test.js
@@ -29,7 +29,7 @@ const checkReport = (report) => {
     'biopsyDate', 'biopsyName', 'presentationDate', 'kbDiseaseMatch',
     'kbUrl', 'pediatricIds', 'captiv8Score', 'appendix', 'hrdetectScore',
     'legacyReportFilepath', 'legacyPresentationFilepath', 'signatures',
-    'intersectTmbScore',
+    'genomeTmb',
   ].forEach((element) => {
     expect(report).toHaveProperty(element);
   });

diff --git a/test/routes/report/reportAsync.test.js b/test/routes/report/reportAsync.test.js
@@ -27,7 +27,7 @@ const checkReport = (report) => {
     'state', 'expression_matrix', 'alternateIdentifier', 'ageOfConsent',
     'biopsyDate', 'biopsyName', 'presentationDate', 'kbDiseaseMatch',
     'kbUrl', 'pediatricIds', 'captiv8Score', 'hrdetectScore', 'appendix',
-    'intersectTmbScore',
+    'genomeTmb',
   ].forEach((element) => {
     expect(report).toHaveProperty(element);
   });

diff --git a/test/testData/mockReportData.json b/test/testData/mockReportData.json
@@ -2,7 +2,7 @@
     "template": "genomic",
     "captiv8Score": 20,
     "hrdetectScore": 10.5,
-    "intersectTmbScore": 9.75,
+    "genomeTmb": 9.75,
     "appendix": "this is an example of an appendix",
     "sampleInfo": [
         {