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Final PR for v1.3.0 #558

Merged
merged 283 commits into from
Jan 17, 2025
Merged

Final PR for v1.3.0 #558

merged 283 commits into from
Jan 17, 2025

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milesAraya
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tienday and others added 30 commits July 2, 2024 20:20
- for get experiments
- for delete experiments
Merge barebone-studio/develop-main to optinist/develop-main
Support for internal linking in multiple environments (markdonw,sphinx). (Use special characters for numbers)
Merge barebone-studio/develop-main to optinist/develop-main
…icon

Refactoring loading icon display at API request
…rser

Add a parser for each ID in the experiment output data path
…icon

add loading icon for fetch workflow api
- add comments
- change `docker compose` command to modern format
- Adjusted build_frontend to work properly
- Adjustment of useless container removal behavior
  - Removed --remove-orphans from docker compose down
  s- Added rm_unused_docker_containers function
- Stabilize and speed up create env (mainly for apple sillicon machine)
- makefile
  - keep test docker image
- docker files
  - docker-compose
    - rename docker-compose service name
  - dockerfile
    - build conda environment in dockerfile
    - keep poetry install status
- fixed snakemake to run properly
  - add and update files needed for testing (.yaml, .pkl)
- organized test cases
itutu-tienday and others added 26 commits January 14, 2025 12:37
(to account for cases where a process exists but pid information cannot be obtained)
- change miniconda use to miniforge use on mac
- other minor formatting adjustments
@milesAraya milesAraya self-assigned this Jan 17, 2025
@milesAraya milesAraya merged commit 9031866 into main Jan 17, 2025
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5 participants