Merge pull request #633 from adokter/bioRad_0.7.2

bioRad 0.7.2
adokter · Sep 26, 2023 · 2f9df62 · 2f9df62
2 parents 26419c9 + 1e065e5
commit 2f9df62
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diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -19,8 +19,8 @@ jobs:
       matrix:
         config:
           - {os: macos-latest,   r: 'release'}
-          # - {os: windows-latest, r: 'release'} # disabled until vol2birdR CRAN release
-          - {os: ubuntu-latest,   r: 'devel'}
+          - {os: windows-latest, r: 'release'}
+          # - {os: ubuntu-latest,   r: 'devel'} # disabled, runtime > 45 min.
           - {os: ubuntu-latest,   r: 'release'}
           - {os: ubuntu-latest,   r: 'oldrel-1'}
 

diff --git a/CRAN-SUBMISSION b/CRAN-SUBMISSION
@@ -1,3 +1,3 @@
-Version: 0.7.1
-Date: 2023-07-17 16:11:14 UTC
-SHA: bab8c99165d91822e5bacd5c62ddf4c6cc94c3d7
+Version: 0.7.2
+Date: 2023-09-06 13:43:18 UTC
+SHA: 8b97beff2a90cd54322e33edf5b957f1931f146f
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: bioRad
 Title: Biological Analysis and Visualization of Weather Radar Data
-Version: 0.7.1.9000
+Version: 0.7.2
 Description: Extract, visualize and summarize aerial movements of birds and
     insects from weather radar data. See Dokter, A. M. et al. (2018) 
     "bioRad: biological analysis and visualization of weather radar data" <doi:10.1111/ecog.04028>

diff --git a/NEWS.md b/NEWS.md
@@ -1,11 +1,15 @@
-# bioRad 0.7.1.9000
+# bioRad 0.7.2
+
+## Bugfixes
 
 * changed default aloft bucket to aloftdata (#622)
 
 * skip tests for `calculate_vp()` when vol2birdR package is not installed (#624)
 
 * fix a bug in the calculation of flight altitude quantiles (#627), which caused underestimation of flight altitude quantiles by up to one altitude bin.
 
+* updates for compatibility with testthat package 3rd edition ($630)
+
 # bioRad 0.7.1
 
 Rebuilds documentation with examples formatted as per CRAN requirements.

diff --git a/R/apply_mistnet.R b/R/apply_mistnet.R
@@ -94,7 +94,7 @@
 #' # Download a NEXRAD file and save as KBGM_example
 #' download.file(
 #'   "https://noaa-nexrad-level2.s3.amazonaws.com/2019/10/01/KBGM/KBGM20191001_000542_V06",
-#'   tempfile
+#'   method="libcurl", mode="wb", tempfile
 #' )
 #'
 #' # Calculate MistNet segmentation

diff --git a/R/download_pvolfiles.R b/R/download_pvolfiles.R
@@ -24,9 +24,9 @@
 #' temp_dir <- paste0(tempdir(),"/bioRad_tmp_files")
 #' dir.create(temp_dir)
 #' download_pvolfiles(
-#'   date_min = as.POSIXct("2016-10-02 20:00", tz = "UTC"),
-#'   date_max = as.POSIXct("2016-10-02 20:05", tz = "UTC"),
-#'   radar = "KBBX",
+#'   date_min = as.POSIXct("2002-10-01 00:00", tz = "UTC"),
+#'   date_max = as.POSIXct("2002-10-01 00:05", tz = "UTC"),
+#'   radar = "KBRO",
 #'   directory = temp_dir,
 #'   overwrite = TRUE
 #' )

diff --git a/R/nexrad_odim.R b/R/nexrad_odim.R
@@ -22,10 +22,8 @@
 #' # download a NEXRAD file, save as KBGM_example
 #' path = file.path(tempdir(), "KBGM_example")
 #' 
-#' download.file(paste("https://noaa-nexrad-level2.s3.amazonaws.com/",
-#'   "2019/10/01/KBGM/KBGM20191001_000542_V06",
-#'   sep = ""
-#' ), path)
+#' download.file(paste0("https://noaa-nexrad-level2.s3.amazonaws.com/",
+#'   "2019/10/01/KBGM/KBGM20191001_000542_V06"), path, method="libcurl", mode="wb")
 #'
 #' # convert to ODIM format
 #' 

diff --git a/README.md b/README.md
@@ -97,7 +97,7 @@ Then load the package with:
 
 ``` r
 library(bioRad)
-#> Welcome to bioRad version 0.7.1.9000
+#> Welcome to bioRad version 0.7.2
 #> using vol2birdR version 1.0.1 (MistNet installed)
 ```
 

diff --git a/codemeta.json b/codemeta.json
@@ -8,7 +8,7 @@
   "codeRepository": "https://github.com/adokter/bioRad/",
   "issueTracker": "https://github.com/adokter/bioRad/issues",
   "license": "https://spdx.org/licenses/MIT",
-  "version": "0.7.1.9000",
+  "version": "0.7.2",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -500,7 +500,7 @@
     },
     "SystemRequirements": null
   },
-  "fileSize": "9100.234KB",
+  "fileSize": "4886.285KB",
   "citation": [
     {
       "@type": "ScholarlyArticle",

diff --git a/man/apply_mistnet.Rd b/man/apply_mistnet.Rd
diff --git a/man/download_pvolfiles.Rd b/man/download_pvolfiles.Rd
diff --git a/man/nexrad_to_odim.Rd b/man/nexrad_to_odim.Rd