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@jonperdomo
jonperdomo committed Oct 21, 2024
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![contextsv_small_15p](https://github.com/WGLab/ContextSV/assets/14855676/79d70c76-a34a-472e-a14c-e49489ae0f09)

# ContextSV
_This is a work in progress, software is under development and not ready for official release._

An alignment-based, generalized structural variant caller for long-read
sequencing/mapping data.
Whole-genome structural variant caller for long read sequencing data.

ContextSV takes as input a long read alignments file (BAM), a
corresponding reference genome file (FASTA), a VCF file with high-quality SNPs
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