Code

New index plots + chl_pp#182

Code

Merged

BBeltz1 merged 19 commits intodevNOAA-EDAB/ecodata:devfrom andy_newplotsNOAA-EDAB/ecodata:andy_newplotsCopy head branch name to clipboardDec 30, 2024

+556-154

Commits

Commits on Dec 11, 2024

• update forage_index link to tech-doc

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• added benthic_index doc file and plot function

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• added zooplankton_index doc file and plot function

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• included phyto_size plot function in plot_chl_pp function

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• namespace changes to for added plot functions

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• updated link to techdoc

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• removed phyto_size data object documentation

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• Added smallcopeALL variable to zooplankton_index

  BBeltz1

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• updated plot_benthic_index and plot_zooplanktio_index to include varName and plotype

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• missing rd file

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Commits on Dec 12, 2024

• only plot_phyt_size when plottype = weekly is selected. This is default. This prevents catlaog displaying the same plot multiple times

  andybeet

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• changed cold pool y axis to display units correctly

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Commits on Dec 13, 2024

• rename benthic_index dataset to benthos_index

  BBeltz1

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• bug fix in plot_Aggregate_biomass (there was a filter <=2023 for planktivores. removed)

  andybeet

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• renamed benthic_index to benthos_index in plot function and data doc

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• Rename benthic_index .Rd files and plot function

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• merge conflict resolution

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• update to bentos_index documentation pages

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• plot full baseline with partial data for weekly chl

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