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Add note on Nextflow task isolation
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fasterius committed Nov 22, 2023
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3 changes: 2 additions & 1 deletion lectures/nextflow/nextflow.html

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9 changes: 5 additions & 4 deletions lectures/nextflow/nextflow.qmd
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Expand Up @@ -14,17 +14,18 @@ format:
- [Scalable]{.green}
- [Platform-agnostic]{.green}
- Based on [Groovy]{.green} and Java
- Large active community in *e.g.* [nf-core]{.green}
- Large active community in _e.g._ [nf-core]{.green}
:::

## Concepts and nomenclature

![](https://training.seqera.io/img/channel-process.png){height=325 fig-align=center}
![](https://training.seqera.io/img/channel-process.png){height=300 fig-align=center}

::: {.incremental}
- [Channels]{.green} contain data, *e.g.* input files
- [Processes]{.green} run some kind of code, *e.g.* a script or a program
- [Channels]{.green} contain data, _e.g._ input files
- [Processes]{.green} run some kind of code, _e.g._ a script or a program
- [Tasks]{.green} are instances of a process, one per process input
- Each task is run in its own, isolated sub-directory
:::

## Anatomy of a process {auto-animate=true}
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