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Fix minor formatting and spelling errors
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johnne committed Nov 15, 2024
1 parent 11805cf commit 9365c3b
Showing 1 changed file with 5 additions and 2 deletions.
7 changes: 5 additions & 2 deletions pages/containers.qmd
Original file line number Diff line number Diff line change
Expand Up @@ -194,7 +194,7 @@ curl -o NCTC8325.fa.gz ftp://ftp.ensemblgenomes.org/pub/bacteria/release-37/fast
gunzip -c NCTC8325.fa.gz > tempfile
```

To download and prepare the input for Bowtie2.
to download and prepare the input for Bowtie2.

Now try running the following Bash code:

Expand Down Expand Up @@ -329,7 +329,10 @@ Next up is:
SHELL ["/bin/bash", "-c"]
```

`SHELL` sets the default shell to use i the container. The `SHELL` instruction has to be written in the `["executable", "parameters"]` syntax, which is referred to as "JSON form". Here we set `SHELL` to the `bash` shell (the `-c` flag is used to pass a command to the shell).
`SHELL` sets the default shell to use in the container. The `SHELL` instruction
has to be written in the `["executable", "parameters"]` syntax, which is
referred to as "JSON form". Here we set `SHELL` to the `bash` shell (the `-c`
flag is used to pass a command to the shell).

The next few lines introduce the important `RUN` instruction, which is used
for executing shell commands:
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