Merge pull request #97 from NBISweden/dev-percyfal

Dev percyfal

.github/workflows/build.yml

@@ -10,7 +10,7 @@ on:
       - 'main'
       - 'test-build'
     tags:
-      - "*"
+      - "v*"
 
 env:
   PARTICIPANT_DATA:
@@ -98,3 +98,47 @@ jobs:
           path: docs
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Render tag and save rendered state in separate branch
+        uses: quarto-dev/quarto-actions/publish@v2
+        if: startsWith(github.ref, 'refs/tags/v')
+        with:
+          target: ${{ github.ref_name }}
+          path: docs
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+      # - name: Checkout archived course versions
+      #   env:
+      #     GITHUB_EMAIL: [email protected]
+      #     GITHUB_USERNAME: gh_action
+      #     TARGET: gh_pages
+      #   run: |
+      #     # Add git info
+      #     git config --global user.email "${{ env.GITHUB_EMAIL }}"
+      #     git config --global user.name "${{ env.GITHUB_USERNAME }}"
+      #     git clone --single-branch --branch ${{ env.TARGET }} "https://${{ secrets.GITHUB_TOKEN }}@github.com/${GITHUB_REPOSITORY}.git" tmprepo
+      #     cd tmprepo
+      #     mkdir -p archive
+      #     cd archive
+      #     git branch -l
+      #     ls -lh
+
+      #     # Add archive index page
+      #     cat .header.html > index.html
+
+      #     # Loop tags that match v\d+
+      #     for tag in $(git tag --list v[0-9][0-9][0-9][0-9]); do
+      #         if [ -d $tag ]; then
+      #             echo "Directory ${tag} already exsists. Removing"
+      #         git clone --depth 1 --branch $tag "https://${{ secrets.GITHUB_TOKEN }}@github.com/${GITHUB_REPOSITORY}.git" $tag
+      #         contents=$(git tag -n 100 $tag --format "%(contents)")
+      #         echo "<section id=\"$tag\" class=\"level3\">" >> index.html
+      #         echo "<h3 class=\"anchored\" data-anchor-id=\"$tag\">" >> index.html
+      #         echo "<a href=\"$link\">$tag</a>" >> index.html
+      #         echo "</h3>" >> index.html
+      #         echo "<p>$contents</p>" >> index.html
+      #         echo "</section>" >> index.html
+      #     done
+
+      #     cat .footer.html >> index.html

.pre-commit-config.yaml

@@ -68,7 +68,9 @@ repos:
           (?x)^(
           docs/slides/population_structure/data/DavidReich/AADR\.ind|
           docs/slides/population_structure/data/DavidReich/AADR\.snp|
-          docs/slides/population_structure/data/DavidReich/AADR\.geno
+          docs/slides/population_structure/data/DavidReich/AADR\.geno|
+          docs/archive/.footer.html|
+          docs/archive/.header.html|
           )
   - repo: https://github.com/lorenzwalthert/precommit
     rev: v0.3.2.9023

docs/_course_info.yml

@@ -1,4 +1,10 @@
 current: NBIS_POPGENIP_H23
+NBIS_POPGENIP_TBA:
+  start_time: null
+  end_time: null
+  application_opens: null
+  application_closes: null
+  canvas_home_page: null
 NBIS_POPGENIP_H23:
   start_time: 2023/11/06
   end_time: 2023/11/10

docs/_quarto.yml

@@ -14,7 +14,7 @@ project:
     - "contents.qmd"
     - "info.qmd"
     - "precourse.qmd"
-    - "references.qmd"
+    #- "references.qmd"
     - "schedule.qmd"
     - "syllabus.qmd"
     # Exercises