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2 changes: 1 addition & 1 deletion .nojekyll
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7 changes: 5 additions & 2 deletions exercises/compute_environment/index.html
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7 changes: 5 additions & 2 deletions exercises/demography/index.html
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Expand Down Expand Up @@ -697,11 +700,11 @@ <h1 class="title">Genetic diversity landscapes</h1>

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<figure class="figure"><p><a href="../datasets/assets/images/stankowski-2019-fig1A.png" class="lightbox" title="Evolutionary relationships across the radiation" data-gallery="quarto-lightbox-gallery-1"><img src="../datasets/assets/images/stankowski-2019-fig1A.png" class="img-fluid figure-img"></a></p>
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<figcaption class="figure-caption">Figure&nbsp;1: Evolutionary relationships across the radiation</figcaption></figure>
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<figure class="figure"><p><a href="../../slides/simulation/assets/images/stankowski-2019-figs2.jpg" class="lightbox" title="Monkeyflower sampling locations" data-gallery="quarto-lightbox-gallery-2"><img src="../../slides/simulation/assets/images/stankowski-2019-figs2.jpg" class="img-fluid figure-img"></a></p>
<figure class="figure"><p><a href="../../slides/simulation/assets/images/stankowski-2019-figs2.jpg" class="lightbox" data-gallery="quarto-lightbox-gallery-2" title="Monkeyflower sampling locations"><img src="../../slides/simulation/assets/images/stankowski-2019-figs2.jpg" class="img-fluid figure-img"></a></p>
<figcaption class="figure-caption">Figure&nbsp;2: Monkeyflower sampling locations</figcaption></figure>
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</div></div><p>We convert the sample information with <code>csvtk</code>. We also add a populations file with all samples belonging to the same population:</p>
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<figure class="figure"><p><a href="https://www.science.org/cms/10.1126/science.aba4674/asset/661d50bb-a085-41af-abdb-06c487ed4e63/assets/graphic/369_aba4674_f2.jpeg" class="lightbox" title="Properties of genetic variation and inferred demographic history in sampled A. millepora. @fuller_PopulationGeneticsCoral_2020, Figure 2. Upper left plot illustrates LD as a function of physical distance. Here, choosing a window size 20-30kb would ensure that most windows are independent." data-gallery="quarto-lightbox-gallery-8"><img src="https://www.science.org/cms/10.1126/science.aba4674/asset/661d50bb-a085-41af-abdb-06c487ed4e63/assets/graphic/369_aba4674_f2.jpeg" class="img-fluid figure-img"></a></p>
<figure class="figure"><p><a href="https://www.science.org/cms/10.1126/science.aba4674/asset/661d50bb-a085-41af-abdb-06c487ed4e63/assets/graphic/369_aba4674_f2.jpeg" class="lightbox" data-gallery="quarto-lightbox-gallery-8" title="Properties of genetic variation and inferred demographic history in sampled A. millepora. @fuller_PopulationGeneticsCoral_2020, Figure 2. Upper left plot illustrates LD as a function of physical distance. Here, choosing a window size 20-30kb would ensure that most windows are independent."><img src="https://www.science.org/cms/10.1126/science.aba4674/asset/661d50bb-a085-41af-abdb-06c487ed4e63/assets/graphic/369_aba4674_f2.jpeg" class="img-fluid figure-img"></a></p>
<figcaption class="figure-caption">Figure&nbsp;3: Properties of genetic variation and inferred demographic history in sampled <em>A. millepora</em>. <span class="citation" data-cites="fuller_PopulationGeneticsCoral_2020">Fuller et al. (<a href="#ref-fuller_PopulationGeneticsCoral_2020" role="doc-biblioref">2020</a>)</span>, Figure 2. Upper left plot illustrates LD as a function of physical distance. Here, choosing a window size 20-30kb would ensure that most windows are independent.</figcaption></figure>
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