Update variant filtering exercise

NBISweden · Oct 18, 2023 · 4410e3d · 4410e3d
1 parent 8981254
commit 4410e3d
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Showing 5 changed files with 246 additions and 108 deletions.
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -85,7 +85,7 @@ repos:
           docs/slides/pgip/index\.qmd|
           docs/slides/datageneration/index\.qmd|
           docs/slides/foundations/index\.qmd|
-          docs/exercises/data_filtering/index\.qmd|
+          docs/exercises/variant_filtering/index\.qmd|
           docs/slides/simulation/index\.qmd
           )$
         minimum_pre_commit_version: "2.13.0"

diff --git a/docs/_data.yml b/docs/_data.yml
@@ -106,7 +106,7 @@ exercises/variant_calling:
     - __variants__
     - __redyellow_variants__
 
-exercises/data_filtering:
+exercises/variant_filtering:
   __data__:
     - __red_recal_bam__
     - __yellow_recal_bam__

diff --git a/docs/_quarto.yml b/docs/_quarto.yml
@@ -22,7 +22,7 @@ project:
     - "exercises/index.qmd"
     - "exercises/simulation/index.qmd"
     - "exercises/variant_calling/index.qmd"
-    - "exercises/data_filtering/index.qmd"
+    - "exercises/variant_filtering/index.qmd"
     # Slides
     - "slides/index.qmd"
     - "slides/pgip/index.qmd"

diff --git a/docs/exercises/index.qmd b/docs/exercises/index.qmd
@@ -13,7 +13,7 @@ listing:
     - datasets/monkeyflowers.qmd
     - simulation/index.qmd
     - variant_calling/index.qmd
-    - data_filtering/index.qmd
+    - variant_filtering/index.qmd
 date: ""
 toc: false
 sidebar: false