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BUG: ignore manifest lines that do not contain s3 URLs #139

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merged 1 commit into from
Nov 25, 2024
Merged

BUG: ignore manifest lines that do not contain s3 URLs #139

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4 changes: 3 additions & 1 deletion idc_index/index.py
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Original file line number Diff line number Diff line change
Expand Up @@ -836,7 +836,9 @@ def _validate_update_manifest_and_get_download_size(
REGEXP_EXTRACT(manifest_cp_cmd, '(?:.*?\\/){{3}}([^\\/?#]+)', 1) AS manifest_crdc_series_uuid,
REGEXP_EXTRACT(manifest_cp_cmd, 's3://\\S+') AS s3_url,
FROM
manifest_df )
manifest_df
WHERE
REGEXP_EXTRACT(manifest_cp_cmd, 's3://\\S+') IS NOT NULL)
SELECT
seriesInstanceuid,
index_crdc_series_uuid,
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