Merge pull request #124 from ImagingDataCommons/v19-update

ENH: update to IDC v19
ImagingDataCommons · Sep 11, 2024 · 44c3977 · 44c3977
2 parents 51a436a + 879bcea
commit 44c3977
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/idc_index/index.py b/idc_index/index.py
@@ -100,7 +100,7 @@ def __init__(self):
             "clinical_index": {
                 "description": "Index of clinical data accompanying the available images.",
                 "installed": False,
-                "url": f"https://idc-open-metadata.s3.amazonaws.com/bigquery_export/idc_{idc_version}_clinical/column_metadata/000000000000.parquet",
+                "url": f"{asset_endpoint_url}/clinical_index.parquet",
             },
         }
 
@@ -1794,6 +1794,7 @@ def sql_query(self, sql_query):
         """
 
         index = self.index
+        logger.debug("Executing SQL query: " + sql_query)
         # TODO: find a more elegant way to automate the following:  https://www.perplexity.ai/search/write-python-code-that-iterate-XY9ppywbQFSRnOpgbwx_uQ
         if hasattr(self, "sm_index"):
             sm_index = self.sm_index

diff --git a/pyproject.toml b/pyproject.toml
@@ -33,8 +33,8 @@ classifiers = [
 dynamic = ["version"]
 dependencies = [
   "click",
-  'duckdb>=0.10.0',
-  "idc-index-data==18.2.0",
+  'duckdb>=0.10.0,<1.1.0',
+  "idc-index-data==19.0.1",
   "packaging",
   "pandas<2.2",
   "psutil",