Updated schema links to point to new deployment

INCF · Apr 29, 2022 · 0cd87d1 · 0cd87d1
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diff --git a/docs/data-models/brainatlas/registering-brain-atlas.html b/docs/data-models/brainatlas/registering-brain-atlas.html
@@ -261,43 +261,43 @@ <h3><a href="#entities" name="entities" class="anchor"><span class="anchor-link"
   </thead>
   <tbody>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-subjectcollection.html">SubjectCollection</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-subjectcollection.html">SubjectCollection</a> </td>
       <td>A collection of subject to be used in the experiment </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-templateimagedata.html">TemplateImageData</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-templateimagedata.html">TemplateImageData</a> </td>
       <td>Template image data acquired and processed from the subject collection </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-parcellationimagedata.html">ParcellationImageData</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-parcellationimagedata.html">ParcellationImageData</a> </td>
       <td>Parcellation image data generated from the template image data </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-parcellationlabel.html">ParcellationLabel</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-parcellationlabel.html">ParcellationLabel</a> </td>
       <td>Parcellation labels correspond to the annotations in the parcellation image </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-templatevolume.html">TemplateVolume</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-templatevolume.html">TemplateVolume</a> </td>
       <td>Template volume generated from the template image data </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-parcellationvolume.html">ParcellationVolume</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-parcellationvolume.html">ParcellationVolume</a> </td>
       <td>Parcellation volume generated from the parcellation image data </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-parcellationontology.html">ParcellationOntology</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-parcellationontology.html">ParcellationOntology</a> </td>
       <td>Parcellation ontology converted from the parcellation label </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-atlasspatialreferencesystem.html">AtlasSpatialReferenceSystem</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-atlasspatialreferencesystem.html">AtlasSpatialReferenceSystem</a> </td>
       <td>The spatial coordinate system of the atlas space </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-atlasrelease.html">AtlasRelease</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-atlasrelease.html">AtlasRelease</a> </td>
       <td>An atlas release comprises template volume, parcellation volume, parcellation ontology as well as the atlas spatial reference system </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-experimentalprotocol.html">Protocol</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-experimentalprotocol.html">Protocol</a> </td>
       <td>Protocol that describes the method used in the design and execution of the experiment </td>
     </tr>
   </tbody>
@@ -312,19 +312,19 @@ <h3><a href="#activities" name="activities" class="anchor"><span class="anchor-l
   </thead>
   <tbody>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-atlasconstruction.html">Atlas Construction</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-atlasconstruction.html">Atlas Construction</a> </td>
       <td>Process to construct a brain atlas </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-templatereconstruction.html">Template Reconstruction</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-templatereconstruction.html">Template Reconstruction</a> </td>
       <td>Reconstruct the template image data into volumetric representation </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-parcellationreconstruction.html">Parcellation Reconstruction</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-parcellationreconstruction.html">Parcellation Reconstruction</a> </td>
       <td>Reconstruct the parcellation image data into volumetric representation </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-ontologyconversion.html">Ontology Conversion</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-ontologyconversion.html">Ontology Conversion</a> </td>
       <td>Convert the parcellation label into ontological representation </td>
     </tr>
   </tbody>
@@ -339,15 +339,15 @@ <h3><a href="#agents" name="agents" class="anchor"><span class="anchor-link"></s
   </thead>
   <tbody>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-schemaperson.html">Person</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-schemaperson.html">Person</a> </td>
       <td>Person associated with an activity </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-provsoftwareagent.html">SoftwareAgent</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-provsoftwareagent.html">SoftwareAgent</a> </td>
       <td>Software associated with an activity </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-schemaorganization.html">Organization</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-schemaorganization.html">Organization</a> </td>
       <td>Organization associated with an activity </td>
     </tr>
   </tbody>

diff --git a/docs/data-models/brainatlas/registering-whole-brain-morphology.html b/docs/data-models/brainatlas/registering-whole-brain-morphology.html
@@ -258,31 +258,31 @@ <h3><a href="#entities" name="entities" class="anchor"><span class="anchor-link"
   </thead>
   <tbody>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-subject.html">Subject</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-subject.html">Subject</a> </td>
       <td>Subject that was used in the experiment </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-templatevolume.html">TemplateVolume</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-templatevolume.html">TemplateVolume</a> </td>
       <td>Template volume generated from the template image data </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-atlasspatialreferencesystem.html">AtlasSpatialReferenceSystem</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-atlasspatialreferencesystem.html">AtlasSpatialReferenceSystem</a> </td>
       <td>The spatial coordinate system of the atlas space </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-imagestack.html">ImageStack</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-imagestack.html">ImageStack</a> </td>
       <td>Image stack obtained from the brain tissue of the subject </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-reconstructedcell.html">ReconstructedCell</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-reconstructedcell.html">ReconstructedCell</a> </td>
       <td>Reconstructed cell </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-transform.html">Transform</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-transform.html">Transform</a> </td>
       <td>A linear or non-linear transform </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-experimentalprotocol.html">Protocol</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-experimentalprotocol.html">Protocol</a> </td>
       <td>Protocol that describes the method used in the design and execution of the experiment </td>
     </tr>
   </tbody>
@@ -297,15 +297,15 @@ <h3><a href="#activities" name="activities" class="anchor"><span class="anchor-l
   </thead>
   <tbody>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-brainimaging.html">BrainImaging</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-brainimaging.html">BrainImaging</a> </td>
       <td>Technique used to obtain an image stack of the brain tissue containing the cells for reconstruction </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-reconstructionfromimage.html">ReconstructionFromImage</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-reconstructionfromimage.html">ReconstructionFromImage</a> </td>
       <td>Technique used to reconstruct the stained cell </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-transformation.html">Transformation</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-transformation.html">Transformation</a> </td>
       <td>Transform a geometric object </td>
     </tr>
   </tbody>
@@ -320,15 +320,15 @@ <h3><a href="#agents" name="agents" class="anchor"><span class="anchor-link"></s
   </thead>
   <tbody>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-schemaperson.html">Person</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-schemaperson.html">Person</a> </td>
       <td>Person associated with an activity </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-provsoftwareagent.html">SoftwareAgent</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-provsoftwareagent.html">SoftwareAgent</a> </td>
       <td>Software associated with an activity </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-schemaorganization.html">Organization</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-schemaorganization.html">Organization</a> </td>
       <td>Organization associated with an activity </td>
     </tr>
   </tbody>

diff --git a/docs/data-models/electrophysiology/intracellularsharpelectrode-recording.html b/docs/data-models/electrophysiology/intracellularsharpelectrode-recording.html
@@ -260,31 +260,31 @@ <h3><a href="#entities" name="entities" class="anchor"><span class="anchor-link"
   </thead>
   <tbody>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-subject.html">Subject</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-subject.html">Subject</a> </td>
       <td>Subject that was used in the experiment </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-slice.html">Slice</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-slice.html">Slice</a> </td>
       <td>Brain slice obtained from the subject </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-intracellularsharpelectroderecordedslice.html">IntraCellularSharpElectrodeRecordedSlice</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-intracellularsharpelectroderecordedslice.html">IntraCellularSharpElectrodeRecordedSlice</a> </td>
       <td>Brain slice containing recorded cells </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-intracellularsharpelectroderecordedslice.html">IntraSharpRecordedCellCollection</a></td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-intracellularsharpelectroderecordedslice.html">IntraSharpRecordedCellCollection</a></td>
       <td>Collection of recorded cells in a single slice </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-intracellularsharpelectroderecordedcell.html">IntraCellularSharpElectrodeRecordedCell</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-intracellularsharpelectroderecordedcell.html">IntraCellularSharpElectrodeRecordedCell</a> </td>
       <td>Cell that was recorded in the slice </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-trace.html">Trace</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-trace.html">Trace</a> </td>
       <td>Individual recording trace of the cell (stimulation/input and response/output trace) </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-experimentalprotocol.html">Protocol</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-experimentalprotocol.html">Protocol</a> </td>
       <td>Protocol that describes the method used in the design and execution of the experiment </td>
     </tr>
   </tbody>
@@ -300,15 +300,15 @@ <h3><a href="#activities" name="activities" class="anchor"><span class="anchor-l
   </thead>
   <tbody>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-brainslicing.html">BrainSlicing</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-brainslicing.html">BrainSlicing</a> </td>
       <td>Technique used to obtain a brain slice </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-intracellularsharpelectrode.html">IntraCellularSharpElectrode</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-intracellularsharpelectrode.html">IntraCellularSharpElectrode</a> </td>
       <td>Technique used to study electrical activity of individual living cells </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-stimulusexperiment.html">StimulusExperiment</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-stimulusexperiment.html">StimulusExperiment</a> </td>
       <td>Technique used to obtain the electrical signature of cells through injection of a defined current pattern </td>
     </tr>
   </tbody>
@@ -324,15 +324,15 @@ <h3><a href="#agents" name="agents" class="anchor"><span class="anchor-link"></s
   </thead>
   <tbody>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-schemaperson.html">Person</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-schemaperson.html">Person</a> </td>
       <td>Person associated with an activity </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-provsoftwareagent.html">SoftwareAgent</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-provsoftwareagent.html">SoftwareAgent</a> </td>
       <td>Software associated with an activity </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-schemaorganization.html">Organization</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-schemaorganization.html">Organization</a> </td>
       <td>Organization associated with an activity </td>
     </tr>
   </tbody>

diff --git a/docs/data-models/electrophysiology/wholecellpatchclamp-recording.html b/docs/data-models/electrophysiology/wholecellpatchclamp-recording.html
@@ -261,31 +261,31 @@ <h3><a href="#entities" name="entities" class="anchor"><span class="anchor-link"
   </thead>
   <tbody>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-subject.html">Subject</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-subject.html">Subject</a> </td>
       <td>Subject that was used in the experiment </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-slice.html">Slice</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-slice.html">Slice</a> </td>
       <td>Brain slice obtained from the subject </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-patchedslice.html">PatchedSlice</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-patchedslice.html">PatchedSlice</a> </td>
       <td>Brain slice containing patched cells </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-patchedcellcollection.html">PatchedCellCollection</a></td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-patchedcellcollection.html">PatchedCellCollection</a></td>
       <td>Collection of patched cells in a single slice (e.g. for multi-patch recordings) </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-patchedcell.html">PatchedCell</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-patchedcell.html">PatchedCell</a> </td>
       <td>Cell that was patched in the slice </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-trace.html">Trace</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-trace.html">Trace</a> </td>
       <td>Individual recording trace of the patched cell (stimulation/input and response/output trace) </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-experimentalprotocol.html">Protocol</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-experimentalprotocol.html">Protocol</a> </td>
       <td>Protocol that describes the method used in the design and execution of the experiment </td>
     </tr>
   </tbody>
@@ -301,15 +301,15 @@ <h3><a href="#activities" name="activities" class="anchor"><span class="anchor-l
   </thead>
   <tbody>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-brainslicing.html">BrainSlicing</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-brainslicing.html">BrainSlicing</a> </td>
       <td>Technique used to obtain a brain slice for patching </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-wholecellpatchclamp.html">WholeCellPatchClamp</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-wholecellpatchclamp.html">WholeCellPatchClamp</a> </td>
       <td>Technique used to study electrical activity of individual living cells </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-stimulusexperiment.html">StimulusExperiment</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-stimulusexperiment.html">StimulusExperiment</a> </td>
       <td>Technique used to obtain the electrical signature of cells through injection of a defined current pattern </td>
     </tr>
   </tbody>
@@ -325,15 +325,15 @@ <h3><a href="#agents" name="agents" class="anchor"><span class="anchor-link"></s
   </thead>
   <tbody>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-schemaperson.html">Person</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-schemaperson.html">Person</a> </td>
       <td>Person associated with an activity </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-provsoftwareagent.html">SoftwareAgent</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-provsoftwareagent.html">SoftwareAgent</a> </td>
       <td>Software associated with an activity </td>
     </tr>
     <tr>
-      <td><a href="https://bbp-nexus.epfl.ch/datamodels/class-schemaorganization.html">Organization</a> </td>
+      <td><a href="https://bbp.epfl.ch/schemas/neuroshapes/class-schemaorganization.html">Organization</a> </td>
       <td>Organization associated with an activity </td>
     </tr>
   </tbody>