Reformat in line with the Google Java Style Guide.

src/main/java/htsjdk/samtools/LinearBAMIndex.java

@@ -19,21 +19,16 @@
 // IN THE SOFTWARE.
 package htsjdk.samtools;
 
-import htsjdk.samtools.CachingBAMFileIndex;
-import htsjdk.samtools.LinearIndex;
-import htsjdk.samtools.SAMSequenceDictionary;
 import htsjdk.samtools.seekablestream.SeekableStream;
 
-/**
- * The htsjdk APIs for accessing the linear BAM index are private...
- */
+/** The htsjdk APIs for accessing the linear BAM index are private... */
 public class LinearBAMIndex extends CachingBAMFileIndex {
 
-        public LinearBAMIndex(SeekableStream stream, SAMSequenceDictionary dict) {
-                super(stream, dict);
-        }
-        
-        public LinearIndex getLinearIndex(int idx) {
-                return getQueryResults(idx).getLinearIndex();
-        }
+  public LinearBAMIndex(SeekableStream stream, SAMSequenceDictionary dict) {
+    super(stream, dict);
+  }
+
+  public LinearIndex getLinearIndex(int idx) {
+    return getQueryResults(idx).getLinearIndex();
+  }
 }

src/main/java/htsjdk/samtools/SAMRecordHelper.java

@@ -1,8 +1,8 @@
 package htsjdk.samtools;
 
 /**
- * This class is required in order to access the protected
- * {@link SAMRecord#eagerDecode()} method in HTSJDK.
+ * This class is required in order to access the protected {@link SAMRecord#eagerDecode()} method in
+ * HTSJDK.
  */
 public class SAMRecordHelper {
   public static void eagerDecode(SAMRecord record) {