Merge pull request #4 from FloridaSEACAR/main

Merge main into TGH
FloridaSEACAR · Mar 18, 2024 · f6ed620 · f6ed620
2 parents 5ff35c1 + 135cd21
commit f6ed620
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diff --git a/.gitignore b/.gitignore
@@ -4,7 +4,6 @@
 .Ruserdata
 
 MA Report Generation/data/
-MA Report Generation/output/
 Coastal_Wetlands/output
 Coral/output
 Nekton/output

diff --git a/MA Report Generation/CoastalWetlands.R b/MA Report Generation/CoastalWetlands.R
diff --git a/MA Report Generation/Coral.R b/MA Report Generation/Coral.R
diff --git a/MA Report Generation/Nekton.R b/MA Report Generation/Nekton.R
diff --git a/MA Report Generation/ReportRender.R b/MA Report Generation/ReportRender.R
@@ -48,7 +48,7 @@ MA_All <- fread("data/ManagedArea.csv", sep = ",", header = TRUE, stringsAsFacto
 #Imports SEACAR data file path information as variable "seacar_data_location"
 source("scripts/SEACAR_data_location.R")
 
-files <- list.files(seacar_data_location, full=TRUE)
+files <- list.files(seacar_data_location, full.names=TRUE)
 hab_files <- str_subset(files, "All_")
 
 cw_file_in <- str_subset(hab_files, "CW")
@@ -85,6 +85,9 @@ source("scripts/SAV-Functions.R")
 source("scripts/Coral.R")
 ############################
 
+seacar_palette <- c("#005396", "#0088B1", "#00ADAE", "#65CCB3", "#AEE4C1", 
+                    "#FDEBA8", "#F8CD6D", "#F5A800", "#F17B00")
+
 ################
 ## file names ##
 # Pulls file names from discrete and cont. file list .txt rendered during .RDS object creation

diff --git a/MA Report Generation/SAV-Functions.R b/MA Report Generation/SAV-Functions.R