removing unused indexes

EGA-archive · May 17, 2024 · 56f43f6 · 56f43f6
1 parent 60999f9
commit 56f43f6
Showing 1 changed file with 10 additions and 10 deletions.
diff --git a/beacon/reindex.py b/beacon/reindex.py
@@ -36,19 +36,19 @@
     client.beacon.validate_collection("similarities")
 except Exception:
     db=client.beacon.create_collection(name="similarities")
-client.beacon.analyses.create_index([("$**", "text")])
-client.beacon.biosamples.create_index([("$**", "text")])
-client.beacon.cohorts.create_index([("$**", "text")])
-client.beacon.datasets.create_index([("$**", "text")])
-client.beacon.genomicVariations.create_index([("$**", "text")])
-client.beacon.genomicVariations.create_index([("caseLevelData.biosampleId", 1)])
-client.beacon.genomicVariations.create_index([("variation.location.interval.end.value", -1), ("variation.location.interval.start.value", 1)])
+#client.beacon.analyses.create_index([("$**", "text")])
+#client.beacon.biosamples.create_index([("$**", "text")])
+#client.beacon.cohorts.create_index([("$**", "text")])
+#client.beacon.datasets.create_index([("$**", "text")])
+#client.beacon.genomicVariations.create_index([("$**", "text")])
+#client.beacon.genomicVariations.create_index([("caseLevelData.biosampleId", 1)])
+#client.beacon.genomicVariations.create_index([("variation.location.interval.end.value", -1), ("variation.location.interval.start.value", 1)])
 client.beacon.genomicVariations.create_index([("variantInternalId", 1), ("caseLevelData.biosampleId", 1)])
-client.beacon.genomicVariations.create_index([("identifiers.genomicHGVSId", 1), ("variation.location.interval.start.value", 1), ("caseLevelData.biosampleId", 1), ("variation.referenceBases", 1), ("variation.alternateBases", 1)])
+#client.beacon.genomicVariations.create_index([("identifiers.genomicHGVSId", 1), ("variation.location.interval.start.value", 1), ("caseLevelData.biosampleId", 1), ("variation.referenceBases", 1), ("variation.alternateBases", 1)])
 client.beacon.genomicVariations.create_index([("variation.location.interval.end.value", -1), ("variation.location.interval.start.value", 1), ("variation.referenceBases", 1), ("variation.alternateBases", 1)])
 client.beacon.genomicVariations.create_index([("molecularAttributes.geneIds", 1), ("variantInternalId", 1), ("variation.variantType", 1)])
-client.beacon.individuals.create_index([("$**", "text")])
-client.beacon.runs.create_index([("$**", "text")])
+#client.beacon.individuals.create_index([("$**", "text")])
+#client.beacon.runs.create_index([("$**", "text")])
 #collection_name = client.beacon.analyses
 #print(collection_name.index_information())