EFO release 3.44.0

EBISPOT · Jul 18, 2022 · f5d9be2 · f5d9be2
1 parent ae2fa9f
commit f5d9be2
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Showing 21 changed files with 304,039 additions and 275,008 deletions.
diff --git a/ExFactor Ontology release notes.txt b/ExFactor Ontology release notes.txt
diff --git a/efo-base.owl b/efo-base.owl
diff --git a/src/ontology/Makefile b/src/ontology/Makefile
@@ -180,8 +180,8 @@ components/mondo_efo_mappings.template.tsv: components/mondo_efo_mappings.tsv
 components/mondo_efo_mappings.owl: mirror/mondo.owl components/mondo_efo_mappings.template.tsv
 	$(ROBOT) --prefix "oboInOwl: http://www.geneontology.org/formats/oboInOwl#" template --input $< --template components/mondo_efo_mappings.template.tsv -o $@
 
-components/mondo_efo_import.owl: components/mondo_efo_mappings.tsv imports/mondo_import.owl components/mondo_efo_mappings.owl
-	java -jar ../../bin/mondo-id-switch.jar components/mondo_efo_mappings.tsv imports/mondo_import.owl $@ &&\
+#components/mondo_efo_import.owl: components/mondo_efo_mappings.tsv imports/mondo_import.owl components/mondo_efo_mappings.owl
+#	java -jar ../../bin/mondo-id-switch.jar components/mondo_efo_mappings.tsv imports/mondo_import.owl $@ &&\
 	$(ROBOT) -v merge -i $@ -i components/mondo_efo_mappings.owl \
 		annotate --ontology-iri http://www.ebi.ac.uk/efo/components/mondo_efo_import.owl -o [email protected] && mv [email protected] $@
 
@@ -280,7 +280,7 @@ release: $(BUILDDIR)/$(ONT).owl $(BUILDDIR)/$(ONT).obo $(BUILDDIR)/$(ONT).json $
 
 $(BUILDDIR)/$(ONT).owl: $(SRC)
 	$(ROBOT) merge -i $< \
-	reason -s true -m false -r hermit \
+	reason -s true -m false -r hermit --equivalent-classes-allowed asserted-only \
 	annotate -a owl:versionInfo `cat version.txt` -a rdfs:comment `date +%Y-%m-%d` -O $(BASE)/$(ONT).owl -V  $(BASE)/releases/v`cat version.txt`/$(ONT).owl -o $@
 
 $(BUILDDIR)/$(ONT).obo: $(BUILDDIR)/$(ONT).owl

diff --git a/src/ontology/components/gwas_import.owl b/src/ontology/components/gwas_import.owl
@@ -27303,6 +27303,14 @@
 
 
 
+    <!-- http://www.ebi.ac.uk/efo/EFO_0010357 -->
+
+    <owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0010357">
+        <efo:gwas_trait rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</efo:gwas_trait>
+    </owl:Class>
+
+
+
     <!-- http://www.ebi.ac.uk/efo/EFO_0010358 -->
 
     <owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0010358">
@@ -27751,6 +27759,14 @@
 
 
 
+    <!-- http://www.ebi.ac.uk/efo/EFO_0010415 -->
+
+    <owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0010415">
+        <efo:gwas_trait rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</efo:gwas_trait>
+    </owl:Class>
+
+
+
     <!-- http://www.ebi.ac.uk/efo/EFO_0010416 -->
 
     <owl:Class rdf:about="http://www.ebi.ac.uk/efo/EFO_0010416">