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Releases: DEploid-dev/DEploid-r

v0.5.6 CRAN

23 Dec 16:02
@shajoezhu shajoezhu
v0.5.6
fab73c3
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v0.5.6 CRAN Latest
Latest
  • Deprecate extractVCF function, changing deploid cpp code, use the latest vcf
Assets 2
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v0.5.4 cran

19 Oct 07:40
@shajoezhu shajoezhu
v0.5.4
e93ab4d
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v0.5.4 cran 
Merge pull request #74 from DEploid-dev/68_new_version

68 new version
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v0.5.0

18 May 07:27
@shajoezhu shajoezhu
v0.5.0
09d8b40
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v0.5.0 Pre-release
Pre-release

  • Major change

  • Bump version to v0.5.0, use large amount new code for DEploid-IBD, not enabled yet

  • Minor change

  • Update import htmlwidget and rmarkdown

Assets 2
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v0.4.4

01 Sep 06:29
@shajoezhu shajoezhu
v0.4.4
d6c8a99
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v0.4.4

DEploid_0.4.4

Major changes

  • None

Bugs

  • None

Improvements

  • Include outliers in plotAltVsRefPlotly, plotHistWSAFPlotly, plotWSAFVsPLAFPlotly and plotObsExpWSAFPlotly
Assets 2
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v0.4.3

09 Aug 21:49
@shajoezhu shajoezhu
v0.4.3
f9fc306
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v0.4.3

This version is exactly the same as the previous two versions v0.4.2 and v0.4.2.pre. Had some troubles on CRAN regarding compiling on solaris operating system.

DEploid_0.4.2

Major changes

  • None

Bugs

  • None

Improvements

  • Include MCMC steps as dEploid function output
  • Use plotly for generating new figures, including plotAltVsRefPlotly, plotHistWSAFPlotly, plotWSAFVsPLAFPlotly and plotObsExpWSAFPlotly
Assets 2
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v0.4.2.pre

09 Aug 21:47
@shajoezhu shajoezhu
v0.4.2.pre
2bfb9d3
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v0.4.2.pre Pre-release
Pre-release

DEploid_0.4.2

Major changes

  • None

Bugs

  • None

Improvements

  • Include MCMC steps as dEploid function output
  • Use plotly for generating new figures, including plotAltVsRefPlotly, plotHistWSAFPlotly, plotWSAFVsPLAFPlotly and plotObsExpWSAFPlotly
Assets 2
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V0.4.2

09 Aug 21:46
@shajoezhu shajoezhu
v0.4.2
2bfb9d3
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V0.4.2 Pre-release
Pre-release

DEploid_0.4.2

Major changes

  • None

Bugs

  • None

Improvements

  • Include MCMC steps as dEploid function output
  • Use plotly for generating new figures, including plotAltVsRefPlotly, plotHistWSAFPlotly, plotWSAFVsPLAFPlotly and plotObsExpWSAFPlotly
Assets 2
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Version 0.4.1

24 Jul 22:27
@shajoezhu shajoezhu
v0.4.1
e094eae
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Version 0.4.1

DEploid_0.4.1

Major changes

  • Implemented IBD method to infer the proportions first.
  • Updated DEploid C++ code to the most updated version.

Bugs

  • None

Improvements

  • Plotting alternative allele count vs reference allele counts with colours.
Assets 2
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Version 0.3.2

08 Dec 12:14
@shajoezhu shajoezhu
0.3.2
8d838be
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Version 0.3.2

First release on CRAN at
https://cran.r-project.org/web/packages/DEploid/index.html

Major improvement

  • reproducible code across platforms
Assets 2
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Version 0.3.1

14 Oct 16:32
@shajoezhu shajoezhu
0.3.1
01060c8
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Version 0.3.1

First release for DEploid R version, using source code from [https://github.com/mcveanlab/DEploid/releases/tag/v0.3-beta.1](DEploid v0.3-beta.1)

Assets 2
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