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amorehead committed Dec 9, 2024
1 parent 2b47c5d commit d9e8bcb
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Showing 2 changed files with 2 additions and 4 deletions.
2 changes: 1 addition & 1 deletion configs/analysis/inference_analysis.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ ensemble_ranking_method: consensus # the method with which to rank-order and sel
input_csv_path: ${resolve_method_input_csv_path:${method},${dataset},${pocket_only_baseline}} # the input CSV filepath with which to run inference
input_data_dir: ${oc.env:PROJECT_ROOT}/data/${dataset}_set # the input protein-ligand complex directory to recursively parse
posebusters_ccd_ids_filepath: ${oc.env:PROJECT_ROOT}/data/posebusters_pdb_ccd_ids.txt # the path to the PoseBusters PDB CCD IDs file that lists the targets that do not contain any crystal contacts
dockgen_test_ids_filepath: ${oc.env:PROJECT_ROOT}/data/dockgen_set/split_test_rmsd_filtered.txt # the path to the (predicted RMSD-filtered) DockGen test set IDs file
dockgen_test_ids_filepath: ${oc.env:PROJECT_ROOT}/data/dockgen_set/split_test.txt # the path to the DockGen test set IDs file
output_dir: ${resolve_method_output_dir:${method},${dataset},${vina_binding_site_method},${ensemble_ranking_method},${repeat_index},${pocket_only_baseline},${v1_baseline}} # the output directory to which to save the relaxed predictions
repeat_index: 1 # the repeat index which was used for inference
pocket_only_baseline: false # whether to analyze the pocket-only baseline
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4 changes: 1 addition & 3 deletions posebench/data/components/plot_dataset_rmsd.py
Original file line number Diff line number Diff line change
Expand Up @@ -272,9 +272,7 @@ def main(cfg: DictConfig):
"dockgen_set",
),
usalign_exec_path=cfg.usalign_exec_path,
filtered_ids_to_keep_file=os.path.join(
cfg.data_dir, "dockgen_set", "split_test_rmsd_filtered.txt"
),
filtered_ids_to_keep_file=os.path.join(cfg.data_dir, "dockgen_set", "split_test.txt"),
)

plot_dataset_rmsd(
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