Scripts paths

Bioconductor · Jan 8, 2025 · 0435e79 · 0435e79
1 parent 652fde8
commit 0435e79
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Showing 6 changed files with 13 additions and 4 deletions.
diff --git a/.github/workflows/create_endpoint.yaml b/.github/workflows/create_endpoint.yaml
@@ -12,6 +12,9 @@ on:
         required: true
         type: string
 
+env:
+  BIOC_HUBSINGEST_PATH: "${{ github.workspace }}"
+
 jobs:
   create-endpoint:
     runs-on: ubuntu-latest
@@ -36,4 +39,5 @@ jobs:
       
       - name: Create endpoint
         run: |
-          ./hubsingest create_endpoint "${{ inputs.username }}" "${{ inputs.size }}" ${{ secrets[env.SECRET_NAME] }}
+          sudo bash install_hubsingest.sh
+          hubsingest create_endpoint "${{ inputs.username }}" "${{ inputs.size }}" ${{ secrets[env.SECRET_NAME] }}
diff --git a/.github/workflows/delete_endpoint.yaml b/.github/workflows/delete_endpoint.yaml
@@ -8,6 +8,9 @@ on:
         required: true
         type: string
 
+env:
+  BIOC_HUBSINGEST_PATH: "${{ github.workspace }}"
+
 jobs:
   delete-endpoint:
     runs-on: ubuntu-latest
@@ -27,4 +30,5 @@ jobs:
       
       - name: Delete endpoint
         run: |
-          ./hubsingest delete_endpoint "${{ inputs.username }}"
+          sudo bash install_hubsingest.sh
+          hubsingest delete_endpoint "${{ inputs.username }}"
diff --git a/hubsingest b/hubsingest
@@ -1,4 +1,5 @@
 #!/bin/bash
+HUBSINGESTPATH=${BIOC_HUBSINGEST_PATH:-/usr/local/bin/hubsingest}
 
 case "$1" in
   create_endpoint)

diff --git a/install_hubsingest.sh b/install_hubsingest.sh
@@ -3,8 +3,8 @@ HUBSINGESTPATH=${BIOC_HUBSINGEST_PATH:-/usr/local/bin/hubsingest}
 mkdir -p $HUBSINGESTPATH
 
 curl -o $HUBSINGESTPATH/hubsingest https://raw.githubusercontent.com/Bioconductor/hubsingest/refs/heads/devel/hubsingest
-curl -o $HUBSINGESTPATH/hubsingest_create_endpoint.sh https://raw.githubusercontent.com/Bioconductor/hubsingest/refs/heads/devel/hubsingest_create_endpoint.sh
-curl -o $HUBSINGESTPATH/hubsingest_delete_endpoint.sh https://raw.githubusercontent.com/Bioconductor/hubsingest/refs/heads/devel/hubsingest_delete_endpoint.sh
+curl -o $HUBSINGESTPATH/hubsingest_create_endpoint.sh https://raw.githubusercontent.com/Bioconductor/hubsingest/refs/heads/devel/scripts/hubsingest_create_endpoint.sh
+curl -o $HUBSINGESTPATH/hubsingest_delete_endpoint.sh https://raw.githubusercontent.com/Bioconductor/hubsingest/refs/heads/devel/scripts/hubsingest_delete_endpoint.sh
 
 chmod +x $HUBSINGESTPATH/hubsingest
 echo 'In order to persist the path, you may want to run, and/or add to your `rc` files:'

diff --git a/hubsingest_create_endpoint.sh → scripts/hubsingest_create_endpoint.sh b/hubsingest_create_endpoint.sh → scripts/hubsingest_create_endpoint.sh
diff --git a/hubsingest_delete_endpoint.sh → scripts/hubsingest_delete_endpoint.sh b/hubsingest_delete_endpoint.sh → scripts/hubsingest_delete_endpoint.sh