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Somatic Mutation Analysis

Bioinformatics Training Platform (BTP) Module: Somatic Mutation Analysis

  • Topic
    • Somatic Mutation Analysis
  • Target Audience
    • Biologists
    • Non-bioinformaticians
    • Little to no programming expereience
  • Prerequisites
    • None
  • Key Learning Outcomes
    • Visualise mutational signatures present in a cohort using somatic single nucleotide mutation data in Variant Call Format (vcf) files.
    • Compare analysis output with published results to identify common mutational signatures.
    • Have gained overview knowledge of how somatic signatures can help with cohort cancer analysis.
    • Run the IntOGen analysis software on cohort mutation data.
    • Have gained experience of the structure of the analysis output files in order to identify potential driver genes.
    • Have gained overview knowledge of different methods for identification of genes important in cancers.
  • Time Required *

License

The contents of this repository are released under the Creative Commons Attribution 3.0 Unported License. For a summary of what this means, please see: http://creativecommons.org/licenses/by/3.0/deed.en_GB