Skip to content

AhmadElsayed/Chromosome-coordinates-converter-using-Ensembl-Perl-API

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

4 Commits
 
 
 
 
 
 

Repository files navigation

Chromosome-coordinates-converter-using-Ensembl-Perl-API

The script converts coordinates on chromosome to its matching region in GRCh37 using the human data from Ensembl and the Perl API

Steps

The user is asked to enter the species
The user is asked to enter the chromosome version that he wants to convert to GRCh37
The user is asked to enter the region start (needs to be numeric)
The user is asked to enter the region end (needs to be numeric)
The user is asked to enter the strand (needs to be numeric)
If all the entries are correct, the corresponding region boundaries will be shown at the screen
Whether the calculation succeed or failed, the user is asked if he wants to do additional calculation with (Y/N) answers
If he entered Y, The application will start over from the first step
If he entered anything else, the answer will be considered No and the application will exit

Screenshot

Group activity by weekday and hour

Watch

About

Chromosome coordinates converter using Ensembl Perl API

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages