ISSM: transition to GitHub repo

[aidanheerdegen]

ISSM code was under subversion but is now hosted on GitHub

https://github.com/ISSMteam/ISSM

The spack package should be updated to use this as the code source

https://github.com/ACCESS-NRI/spack-packages/blob/main/packages/issm/package.py

[aidanheerdegen]

Talking to @headmetal I think we need to first fork the ISSM repo to ACCESS-NRI, and use that.

[aidanheerdegen]

Tried a test build of the current package with spack/0.22

spack install ism

The scalapack package failed to build with errors like

     160    /scratch/tm70/axxXXX/tmp/spack-stage/spack-stage-netlib-scalapack-2.2.0-hid6wnaqdo47dn3g4bzs6iuqlou56biv/spack-src/BLACS/
            SRC/igamx2d_.c: In function 'igamx2d_':                                                                                   
  >> 161    /scratch/tm70/axxXXX/tmp/spack-stage/spack-stage-netlib-scalapack-2.2.0-hid6wnaqdo47dn3g4bzs6iuqlou56biv/spack-src/BLACS/ 
            SRC/igamx2d_.c:201:7: error: implicit declaration of function 'BI_imvcopy'; did you mean 'BI_zmvcopy'? [-Wimplicit-functi
            on-declaration]                                                                                                                162      201 |       BI_imvcopy(Mpval(m), Mpval(n), A, tlda, bp->Buff);                                                         
     163          |       ^~~~~~~~~~                                                                                                 
     164          |       BI_zmvcopy                                                                                                 
  >> 165    /scratch/tm70/axxXXX/tmp/spack-stage/spack-stage-netlib-scalapack-2.2.0-hid6wnaqdo47dn3g4bzs6iuqlou56biv/spack-src/BLACS/
            SRC/igamx2d_.c:280:13: error: implicit declaration of function 'BI_ivmcopy'; did you mean 'BI_cvmcopy'? [-Wimplicit-funct
            ion-declaration]                                                                                                 
     166      280 |             BI_ivmcopy(Mpval(m), Mpval(n), A, tlda, bp2->Buff);                                                  
     167          |             ^~~~~~~~~~                                                                                           
     168          |             BI_cvmcopy                                                                           

According to this issue on the GitHub repo this happens with gcc/14 and can be solved by building with gcc/13

Reference-ScaLAPACK/scalapack#97

So I tested again with

spack install issm %gcc@13

which built scalapack without issue.

Unfortunately it stalled at the ISSM build because it needs a password for the svn server

[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/automake-1.16.5-3pzpcjcdrqpt3iaqy3zeqzqjybalbjtf
==> Installing issm-develop-olwa5wltn77pspqbxzptfedjet57v72s [28/28]
==> No binary for issm-develop-olwa5wltn77pspqbxzptfedjet57v72s found: installing from source
Authentication realm: <https://issm.ess.uci.edu:443> Your s383 passwd
Password for 'xxxxxx': 

Perhaps this was always an issue and required creds to be a available in a .subversion config file?

Will try modifying the package file and switching to GitHub source.

[aidanheerdegen]

Compiled successfully with changes in #172

$ spack install issm %gcc@13
[+] /usr (external glibc-2.28-rmko4qyyetyn6neqs7tnuusqbllgwbnb)
[+] /usr (external perl-5.26.3-fzd77youpv65w3iats7nxqytxqdqo4bm)
==> [email protected] : has external module in ['openmpi/4.1.5']
[+] /apps/openmpi/4.1.5 (external openmpi-4.1.5-72pqqsfuruvk7bj4z2hpjt6gj24nbvcu)                                           
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-14.1.0/gcc-runtime-14.1.0-qukvuocm7w3d226pa4tnari6lgx4daoa
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/zlib-ng-2.1.6-cp374wsrjqbx6mkdthgcf5das2g3al4l 
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/pkgconf-2.2.0-jlurhmknayaryh2buqeu2k4j6r2cu65o 
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/findutils-4.9.0-2h54tywt2h6edhy5akvawj2tsehrhg6c[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/automake-1.16.5-3pzpcjcdrqpt3iaqy3zeqzqjybalbjtf
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/m1qn3-3.3-icpphnvskhuwkdtyq3gfmwzq433235vb
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/openblas-0.3.26-hxo276xs6nnzuvi5q7jtcso2ivevj5su[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/metis-5.1.0-g5gv6j4wxslksmtg2emgx4xlb5qfxfby   
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/gmake-4.4.1-4gmfgeb35fj3snq7icyur56acxm2htp2   
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/libtool-2.4.7-bzoo7xah654rew5qdnjieqetrvq33izi 
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/hypre-2.31.0-h7zqxqr7oidx6ij7jltss3utcthklwbq  
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/netlib-scalapack-2.2.0-rh4algkgme552t76dy2uvle7alrino6n
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/hdf5-1.14.3-xu2tn7rqf57ufnropro72wm5tgadh6el   
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/parmetis-4.0.3-h2rdc7lumyqolmhhevai33vjbefaa3ca
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/libsigsegv-2.14-g5jyrqrez75o6tmjfe7snz2bebqv4362
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/superlu-dist-8.2.1-c6qawvgbijmhgtrv3ow6gffp3qnnw7ho
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/mumps-5.6.2-l6du5tjofbrhm4wrlihyytp2vmcmmbzt   
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/m4-1.4.19-45kmz7zyso7xaqq2db3kpt7h4wkfi6vf     
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/petsc-3.21.1-rkfrl4eesj4xge2nvspfqajwpwkq7s7b  
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/autoconf-2.72-xumkhk7b4hv5reb7w7mehzqjrt2xecfk 
==> Installing issm-4.24-jkmku74v4g3zdqjjyokpravl3zckcv7c [24/24]
==> No binary for issm-4.24-jkmku74v4g3zdqjjyokpravl3zckcv7c found: installing from source                                  
==> Fetching https://github.com/ISSMteam/ISSM/archive/refs/tags/v4.24.tar.gz
==> No patches needed for issm
==> issm: Executing phase: 'autoreconf'
==> issm: Executing phase: 'configure'
==> issm: Executing phase: 'build'
==> issm: Executing phase: 'install'
==> issm: Successfully installed issm-4.24-jkmku74v4g3zdqjjyokpravl3zckcv7c                                                 
  Stage: 10.89s.  Autoreconf: 12.18s.  Configure: 39.95s.  Build: 5m 24.19s.  Install: 9.71s.  Post-install: 2.55s.  Total: 6m 43.76s
[+] /g/data/tm70/axxXXX/spack/0.22/release/linux-rocky8-x86_64_v4/gcc-13.2.0/issm-4.24-jkmku74v4g3zdqjjyokpravl3zckcv7c