From e9d1a480f48fd64e05af75fe925818a06ad67150 Mon Sep 17 00:00:00 2001 From: zackbatist Date: Fri, 13 Sep 2024 12:37:30 -0400 Subject: [PATCH] Several new entries from the past couple weeks. --- README.md | 56 ++++++++++++++++++++++++++++++++++++++++++++++++ list.md | 56 ++++++++++++++++++++++++++++++++++++++++++++++++ open-archaeo.csv | 7 ++++++ 3 files changed, 119 insertions(+) diff --git a/README.md b/README.md index 0208b9ec..4a60796c 100644 --- a/README.md +++ b/README.md @@ -264,6 +264,13 @@ This readme and the [web interface](https://open-archaeo.info) are automatically ---- +* **ArchaeoMag**: Program for the modelling of magnetic anomalies in archaeological research. + * by: antonio-schettino + * links: [GitHub](https://github.com/antonio-schettino/ArchaeoMag) + * tags: [Geophysical survey] + +---- + * **ArchaeoPhases**: Tools for the post-processing of the Markov Chain simulated by any software used for the construction of archeological chronologies. * by: ArchaeoStat * links: [GitHub](https://github.com/ArchaeoStat/ArchaeoPhases) @@ -1363,6 +1370,13 @@ This readme and the [web interface](https://open-archaeo.info) are automatically ---- +* **SurveyeR**: Uses a Dirichlet process to probabilistically assess the phase of undated archaeological assemblages. + * by: acortell3 + * links: [GitHub](https://github.com/acortell3/SurveyeR) + * tags: [Seriation] + +---- + * **Sériation de matrice en présence/absence**: Excel file containing macro commands making it possible to transform a 1/0 table (presence / absence) into a graphic matrix treated by matrix permutations; it is possible to take into account the uncertain presence of a character. The instructions for use are contained in the file. * by: Bruno Desachy * links: [Website](https://abp.hypotheses.org/le-programme-bassin-parisien/les-projets/les-projets-associes-au-programme/outils-danalyse-graphique-des-donnees) @@ -1867,6 +1881,13 @@ This readme and the [web interface](https://open-archaeo.info) are automatically ---- +* **c14Intervals**: R package for calculating probability intervals and point estimates for calibrated radiocarbon dates. + * by: jallison7 + * links: [GitHub](https://github.com/jallison7/c14Intervals) + * tags: [Radiocarbon dating, calibration and sequencing] + +---- + * **c14bazAAR**: R package to query different openly accessible radiocarbon date databases, allowing for basic data cleaning, calibration and merging * by: ISAAKiel * links: [GitHub](https://github.com/ropensci/c14bazAAR) @@ -2056,6 +2077,13 @@ This readme and the [web interface](https://open-archaeo.info) are automatically ---- +* **cran-JSDNE**: JSDNE is an age estimation methods with 3D reconstructed auricular surface. + * by: jisunjang19 + * links: [GitHub](https://github.com/jisunjang19/cran-JSDNE) [CRAN](https://cran.r-project.org/web/packages/JSDNE/index.html) + * tags: + +---- + * **cranial-sex-estimation-code**: Data analysis implementation for evaluating a novel sex estimation method based on skullanalyzer data. * by: pr0m1th3as * links: [GitHub](https://github.com/pr0m1th3as/cranial-sex-estimation-code) @@ -2182,6 +2210,13 @@ This readme and the [web interface](https://open-archaeo.info) are automatically ---- +* **eratosthenes**: Provides a coherent foundation for archaeological chronology-building by incorporating, computationally, all relevant sources of information on uncertain archaeological or historical dates. + * by: scollinselliott + * links: [GitHub](https://github.com/scollinselliott/eratosthenes) + * tags: [Chronological modelling] + +---- + * **ethnobotanyR**: R package for calculating quantitative ethnobotany indices. * by: CWWhitney * links: [GitHub](https://github.com/CWWhitney/ethnobotanyR) [Website](http://htmlpreview.github.io/?https://github.com/CWWhitney/ethnobotanyR/blob/master/vignettes/ethnobotanyr_vignette.html) @@ -2455,6 +2490,13 @@ This readme and the [web interface](https://open-archaeo.info) are automatically ---- +* **lakhesis**: Provides an interactive platform and critical measures for seriating binary data matrices through the exploration, selection, and consensus of partially seriated sequences. + * by: scollinselliott + * links: [GitHub](https://github.com/scollinselliott/lakhesis) [CRAN](https://cran.r-project.org/web/packages/lakhesis/index.html) + * tags: [Statistical analysis] + +---- + * **leastcostpath**: Provides the functionality to calculate Least Cost Paths (LCPs) which are often, but not exclusively, used in archaeological research. This package can be used to apply multiple cost functions when approximating the difficulty of moving across a landscape, as well as taking into account traversing across slope and other costs such as landscape features. This package also provides functionality to validate the accuracy of the computed LCP relative to another path. * by: josephlewis * links: [GitHub](https://github.com/josephlewis/leastcostpath) @@ -2623,6 +2665,13 @@ This readme and the [web interface](https://open-archaeo.info) are automatically ---- +* **neonet**: NeoNet serves as a framework to study the transition from the Late Mesolithic to the Early Neolithic through spatio-temporal modeling of radiocarbon dates + * by: zoometh + * links: [GitHub](https://github.com/zoometh/neonet) + * tags: [Radiocarbon dating, calibration and sequencing] + +---- + * **neotoma**: Programmatic R interface to the Neotoma Paleoecological Database * by: ropensci * links: [GitHub](https://github.com/ropensci/neotoma) @@ -3351,6 +3400,13 @@ This readme and the [web interface](https://open-archaeo.info) are automatically ---- +* **synthkat**: Construct flexible, synthetic categories of established ceramic and glass vessel classifications and typologies. + * by: scollinselliott + * links: [GitHub](https://github.com/scollinselliott/synthkat) + * tags: + +---- + * **tRauma**: Interactive graphical user interface to aid in the interpretation of blunt-force rib trauma in forensic anthropology casework. * by: ElaineYChu * links: [GitHub](https://github.com/ElaineYChu/tRauma) diff --git a/list.md b/list.md index 21dc5971..72891e0e 100644 --- a/list.md +++ b/list.md @@ -250,6 +250,13 @@ ---- +* **ArchaeoMag**: Program for the modelling of magnetic anomalies in archaeological research. + * by: antonio-schettino + * links: [GitHub](https://github.com/antonio-schettino/ArchaeoMag) + * tags: [Geophysical survey] + +---- + * **ArchaeoPhases**: Tools for the post-processing of the Markov Chain simulated by any software used for the construction of archeological chronologies. * by: ArchaeoStat * links: [GitHub](https://github.com/ArchaeoStat/ArchaeoPhases) @@ -1349,6 +1356,13 @@ ---- +* **SurveyeR**: Uses a Dirichlet process to probabilistically assess the phase of undated archaeological assemblages. + * by: acortell3 + * links: [GitHub](https://github.com/acortell3/SurveyeR) + * tags: [Seriation] + +---- + * **Sériation de matrice en présence/absence**: Excel file containing macro commands making it possible to transform a 1/0 table (presence / absence) into a graphic matrix treated by matrix permutations; it is possible to take into account the uncertain presence of a character. The instructions for use are contained in the file. * by: Bruno Desachy * links: [Website](https://abp.hypotheses.org/le-programme-bassin-parisien/les-projets/les-projets-associes-au-programme/outils-danalyse-graphique-des-donnees) @@ -1853,6 +1867,13 @@ ---- +* **c14Intervals**: R package for calculating probability intervals and point estimates for calibrated radiocarbon dates. + * by: jallison7 + * links: [GitHub](https://github.com/jallison7/c14Intervals) + * tags: [Radiocarbon dating, calibration and sequencing] + +---- + * **c14bazAAR**: R package to query different openly accessible radiocarbon date databases, allowing for basic data cleaning, calibration and merging * by: ISAAKiel * links: [GitHub](https://github.com/ropensci/c14bazAAR) @@ -2042,6 +2063,13 @@ ---- +* **cran-JSDNE**: JSDNE is an age estimation methods with 3D reconstructed auricular surface. + * by: jisunjang19 + * links: [GitHub](https://github.com/jisunjang19/cran-JSDNE) [CRAN](https://cran.r-project.org/web/packages/JSDNE/index.html) + * tags: + +---- + * **cranial-sex-estimation-code**: Data analysis implementation for evaluating a novel sex estimation method based on skullanalyzer data. * by: pr0m1th3as * links: [GitHub](https://github.com/pr0m1th3as/cranial-sex-estimation-code) @@ -2168,6 +2196,13 @@ ---- +* **eratosthenes**: Provides a coherent foundation for archaeological chronology-building by incorporating, computationally, all relevant sources of information on uncertain archaeological or historical dates. + * by: scollinselliott + * links: [GitHub](https://github.com/scollinselliott/eratosthenes) + * tags: [Chronological modelling] + +---- + * **ethnobotanyR**: R package for calculating quantitative ethnobotany indices. * by: CWWhitney * links: [GitHub](https://github.com/CWWhitney/ethnobotanyR) [Website](http://htmlpreview.github.io/?https://github.com/CWWhitney/ethnobotanyR/blob/master/vignettes/ethnobotanyr_vignette.html) @@ -2441,6 +2476,13 @@ ---- +* **lakhesis**: Provides an interactive platform and critical measures for seriating binary data matrices through the exploration, selection, and consensus of partially seriated sequences. + * by: scollinselliott + * links: [GitHub](https://github.com/scollinselliott/lakhesis) [CRAN](https://cran.r-project.org/web/packages/lakhesis/index.html) + * tags: [Statistical analysis] + +---- + * **leastcostpath**: Provides the functionality to calculate Least Cost Paths (LCPs) which are often, but not exclusively, used in archaeological research. This package can be used to apply multiple cost functions when approximating the difficulty of moving across a landscape, as well as taking into account traversing across slope and other costs such as landscape features. This package also provides functionality to validate the accuracy of the computed LCP relative to another path. * by: josephlewis * links: [GitHub](https://github.com/josephlewis/leastcostpath) @@ -2609,6 +2651,13 @@ ---- +* **neonet**: NeoNet serves as a framework to study the transition from the Late Mesolithic to the Early Neolithic through spatio-temporal modeling of radiocarbon dates + * by: zoometh + * links: [GitHub](https://github.com/zoometh/neonet) + * tags: [Radiocarbon dating, calibration and sequencing] + +---- + * **neotoma**: Programmatic R interface to the Neotoma Paleoecological Database * by: ropensci * links: [GitHub](https://github.com/ropensci/neotoma) @@ -3337,6 +3386,13 @@ ---- +* **synthkat**: Construct flexible, synthetic categories of established ceramic and glass vessel classifications and typologies. + * by: scollinselliott + * links: [GitHub](https://github.com/scollinselliott/synthkat) + * tags: + +---- + * **tRauma**: Interactive graphical user interface to aid in the interpretation of blunt-force rib trauma in forensic anthropology casework. * by: ElaineYChu * links: [GitHub](https://github.com/ElaineYChu/tRauma) diff --git a/open-archaeo.csv b/open-archaeo.csv index 582e3a6e..99cf2217 100644 --- a/open-archaeo.csv +++ b/open-archaeo.csv @@ -508,3 +508,10 @@ RJradiocarbon,Radiocarbon calibration of multiple 14C samples using reversible j "Mycenaean Atlas Project ",The purpose of the Mycenaean Atlas is to furnish accurate lat/lon pairs for Bronze Age sites in the central and eastern Mediterranean.,,,,,,,,,,,,http://helladic.info/,,,Robert Consoli,,,,,,Lists and datasets,,Lists,,,,,, Curso_Intro_R_Arqueologia,Introductory course to R for archaeologists (Spanish).,https://github.com/Mcotsar/Curso_Intro_R_Arqueologia,,,,,,,,,,,,,,Mcotsar,,,,,,Guides,,Educational resources and practical guides,,,,,, neonet,NeoNet serves as a framework to study the transition from the Late Mesolithic to the Early Neolithic through spatio-temporal modeling of radiocarbon dates,https://github.com/zoometh/neonet,,,,,,,,,,,,,,zoometh,,,,,,Packages and libraries,R,"Radiocarbon dating, calibration and sequencing",,,,,, +c14Intervals,R package for calculating probability intervals and point estimates for calibrated radiocarbon dates.,https://github.com/jallison7/c14Intervals,,,,,,,,,,,,,,jallison7,,,,,,Packages and libraries,R,"Radiocarbon dating, calibration and sequencing",,,,,, +SurveyeR,Uses a Dirichlet process to probabilistically assess the phase of undated archaeological assemblages.,https://github.com/acortell3/SurveyeR,,,,,,,,,,,,,,acortell3,,,,,,Packages and libraries,R,Seriation,,,,,, +cran-JSDNE,JSDNE is an age estimation methods with 3D reconstructed auricular surface.,https://github.com/jisunjang19/cran-JSDNE,,,,,,,,https://cran.r-project.org/web/packages/JSDNE/index.html,,,,10.1016/j.jas.2024.106080,,jisunjang19,,,,,,Packages and libraries,R,Artefact morphology,,,,,, +eratosthenes,"Provides a coherent foundation for archaeological chronology-building by incorporating, computationally, all relevant sources of information on uncertain archaeological or historical dates.",https://github.com/scollinselliott/eratosthenes,,,,,,,,,,,,,,scollinselliott,,,,,,Packages and libraries,R,Chronological modelling,,,,,, +synthkat,"Construct flexible, synthetic categories of established ceramic and glass vessel classifications and typologies.",https://github.com/scollinselliott/synthkat,,,,,,,,,,,,,,scollinselliott,,,,,,Packages and libraries,Python,Artefact morphology,Data management,,,,, +lakhesis,"Provides an interactive platform and critical measures for seriating binary data matrices through the exploration, selection, and consensus of partially seriated sequences.",https://github.com/scollinselliott/lakhesis,,,,,,,,https://cran.r-project.org/web/packages/lakhesis/index.html,,,,,,scollinselliott,,,,,,Packages and libraries,R,Statistical analysis,,,,,, +ArchaeoMag,Program for the modelling of magnetic anomalies in archaeological research.,https://github.com/antonio-schettino/ArchaeoMag,,,,,,,,,,,,10.4430/bgta0296,,antonio-schettino,,,,,,Standalone software,,Geophysical survey,,,,,,