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Hi, I was wondering if I would want to build a h5 file as the training input for the BABEL model from a count matrix + a metadata Dataframe, are there any scripts under this repo for that? or I need to make a scanpy subject. Also, I'm a bit confused about python bin/train.py --data FILE1.h5 FILE2.h5 --outdir mymodel 1) should the command be "train_model.py"? 2) what information do FILE1 and FILE2 include? since you mentioned both should include RNA and ATAC, are they just two replicates of multiomics data? Thanks
The text was updated successfully, but these errors were encountered:
Hi, I was wondering if I would want to build a h5 file as the training input for the BABEL model from a count matrix + a metadata Dataframe, are there any scripts under this repo for that? or I need to make a scanpy subject. Also, I'm a bit confused about
python bin/train.py --data FILE1.h5 FILE2.h5 --outdir mymodel
1) should the command be "train_model.py"? 2) what information do FILE1 and FILE2 include? since you mentioned both should include RNA and ATAC, are they just two replicates of multiomics data? ThanksThe text was updated successfully, but these errors were encountered: