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image broken / R 4.0.0 + 4.0.2 mix #10

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lwaldron opened this issue Jul 28, 2020 · 1 comment

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lwaldron commented Jul 28, 2020

Affected by the same error as waldronlab/MultiAssayWorkshop#3. Discussion in community-bioc Slack #biocworkshopbook.

lwaldron@wallabe4:~$ docker pull ludwigg/enrichomics:latest
latest: Pulling from ludwigg/enrichomics
Digest: sha256:0262cc475bbb7b4945d60e56e14470a3011331642681ca66c1a0bc8905ecb1e7
Status: Image is up to date for ludwigg/enrichomics:latest
docker.io/ludwigg/enrichomics:latest
lwaldron@wallabe4:~$ docker run -it ludwigg/enrichomics:latest R -e "devtools::build_vignettes()"

...

Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object '/usr/local/lib/R/site-library/git2r/libs/git2r.so':
  libssh2.so.1: cannot open shared object file: No such file or directory
Calls: <Anonymous> ... getNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted

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lwaldron commented Jul 28, 2020

This was already updating/building in two separate steps, try using bioconductor_docker:devel tag in ffd3bf5

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