This repository contains the metadata and the R scripts associated with the paper:
Cordier T, Barrenechea Angeles I, Henry N, Lejzerowicz F, Berney C, Morard R, Brandt A, Cambon-Bonavita M-A, Guidi L, Lombard F, Arbizu PM, Massana R, Orejas C, Poulain J, Smith CR, Wincker P, Arnaud-Haond S, Gooday AJ, de Vargas C, Pawlowski J, 2022. Patterns of eukaryotic diversity from the surface to the deep-ocean sediment. Science Advances, 8 (5), eabj9309. DOI: 10.1126/sciadv.abj9309
The sediment raw data is available at European Nucleotide Archive under BioProject PRJEB48517 and PRJEB33873.
Pelagic raw data accessions as well as other publicly available 18S-V9 datasets can be found in respective publications listed in Table S2 of the paper or in the all_libs_biosample_mapping.txt file.
Release at the acceptance of the paper, as a GitHub release or on Zenodo (DOI: 10.5281/zenodo.5771540)