diff --git a/README.md b/README.md index d5eab75a..6e254827 100644 --- a/README.md +++ b/README.md @@ -34,7 +34,7 @@ Most of the nucleotide based commands and options in USEARCH version 7 are suppo ## Getting Help -If you can't find an answer in the [VSEARCH documentation](https://github.com/torognes/vsearch/releases/download/v2.15.1/vsearch_manual.pdf), please visit the [VSEARCH Web Forum](https://groups.google.com/forum/#!forum/vsearch-forum) to post a question or start a discussion. +If you can't find an answer in the [VSEARCH documentation](https://github.com/torognes/vsearch/releases/download/v2.15.2/vsearch_manual.pdf), please visit the [VSEARCH Web Forum](https://groups.google.com/forum/#!forum/vsearch-forum) to post a question or start a discussion. ## Example @@ -47,9 +47,9 @@ In the example below, VSEARCH will identify sequences in the file database.fsa t **Source distribution** To download the source distribution from a [release](https://github.com/torognes/vsearch/releases) and build the executable and the documentation, use the following commands: ``` -wget https://github.com/torognes/vsearch/archive/v2.15.1.tar.gz -tar xzf v2.15.1.tar.gz -cd vsearch-2.15.1 +wget https://github.com/torognes/vsearch/archive/v2.15.2.tar.gz +tar xzf v2.15.2.tar.gz +cd vsearch-2.15.2 ./autogen.sh ./configure make @@ -78,43 +78,43 @@ Binary distributions are provided for x86-64 systems running GNU/Linux, macOS (v Download the appropriate executable for your system using the following commands if you are using a Linux x86_64 system: ```sh -wget https://github.com/torognes/vsearch/releases/download/v2.15.1/vsearch-2.15.1-linux-x86_64.tar.gz -tar xzf vsearch-2.15.1-linux-x86_64.tar.gz +wget https://github.com/torognes/vsearch/releases/download/v2.15.2/vsearch-2.15.2-linux-x86_64.tar.gz +tar xzf vsearch-2.15.2-linux-x86_64.tar.gz ``` Or these commands if you are using a Linux ppc64le system: ```sh -wget https://github.com/torognes/vsearch/releases/download/v2.15.1/vsearch-2.15.1-linux-ppc64le.tar.gz -tar xzf vsearch-2.15.1-linux-ppc64le.tar.gz +wget https://github.com/torognes/vsearch/releases/download/v2.15.2/vsearch-2.15.2-linux-ppc64le.tar.gz +tar xzf vsearch-2.15.2-linux-ppc64le.tar.gz ``` Or these commands if you are using a Linux aarch64 system: ```sh -wget https://github.com/torognes/vsearch/releases/download/v2.15.1/vsearch-2.15.1-linux-aarch64.tar.gz -tar xzf vsearch-2.15.1-linux-aarch64.tar.gz +wget https://github.com/torognes/vsearch/releases/download/v2.15.2/vsearch-2.15.2-linux-aarch64.tar.gz +tar xzf vsearch-2.15.2-linux-aarch64.tar.gz ``` Or these commands if you are using a Mac: ```sh -wget https://github.com/torognes/vsearch/releases/download/v2.15.1/vsearch-2.15.1-macos-x86_64.tar.gz -tar xzf vsearch-2.15.1-macos-x86_64.tar.gz +wget https://github.com/torognes/vsearch/releases/download/v2.15.2/vsearch-2.15.2-macos-x86_64.tar.gz +tar xzf vsearch-2.15.2-macos-x86_64.tar.gz ``` Or if you are using Windows, download and extract (unzip) the contents of this file: ``` -https://github.com/torognes/vsearch/releases/download/v2.15.1/vsearch-2.15.1-win-x86_64.zip +https://github.com/torognes/vsearch/releases/download/v2.15.2/vsearch-2.15.2-win-x86_64.zip ``` -Linux and Mac: You will now have the binary distribution in a folder called `vsearch-2.15.1-linux-x86_64` or `vsearch-2.15.1-macos-x86_64` in which you will find three subfolders `bin`, `man` and `doc`. We recommend making a copy or a symbolic link to the vsearch binary `bin/vsearch` in a folder included in your `$PATH`, and a copy or a symbolic link to the vsearch man page `man/vsearch.1` in a folder included in your `$MANPATH`. The PDF version of the manual is available in `doc/vsearch_manual.pdf`. +Linux and Mac: You will now have the binary distribution in a folder called `vsearch-2.15.2-linux-x86_64` or `vsearch-2.15.2-macos-x86_64` in which you will find three subfolders `bin`, `man` and `doc`. We recommend making a copy or a symbolic link to the vsearch binary `bin/vsearch` in a folder included in your `$PATH`, and a copy or a symbolic link to the vsearch man page `man/vsearch.1` in a folder included in your `$MANPATH`. The PDF version of the manual is available in `doc/vsearch_manual.pdf`. -Windows: You will now have the binary distribution in a folder called `vsearch-2.15.1-win-x86_64`. The vsearch executable is called `vsearch.exe`. The manual in PDF format is called `vsearch_manual.pdf`. +Windows: You will now have the binary distribution in a folder called `vsearch-2.15.2-win-x86_64`. The vsearch executable is called `vsearch.exe`. The manual in PDF format is called `vsearch_manual.pdf`. -**Documentation** The VSEARCH user's manual is available in the `man` folder in the form of a [man page](https://github.com/torognes/vsearch/blob/master/man/vsearch.1). A pdf version ([vsearch_manual.pdf](https://github.com/torognes/vsearch/releases/download/v2.15.1/vsearch_manual.pdf)) will be generated by `make`. To install the manpage manually, copy the `vsearch.1` file or a create a symbolic link to `vsearch.1` in a folder included in your `$MANPATH`. The manual in both formats is also available with the binary distribution. The manual in PDF form ([vsearch_manual.pdf](https://github.com/torognes/vsearch/releases/download/v2.15.1/vsearch_manual.pdf)) is also attached to the latest [release](https://github.com/torognes/vsearch/releases). +**Documentation** The VSEARCH user's manual is available in the `man` folder in the form of a [man page](https://github.com/torognes/vsearch/blob/master/man/vsearch.1). A pdf version ([vsearch_manual.pdf](https://github.com/torognes/vsearch/releases/download/v2.15.2/vsearch_manual.pdf)) will be generated by `make`. To install the manpage manually, copy the `vsearch.1` file or a create a symbolic link to `vsearch.1` in a folder included in your `$MANPATH`. The manual in both formats is also available with the binary distribution. The manual in PDF form ([vsearch_manual.pdf](https://github.com/torognes/vsearch/releases/download/v2.15.2/vsearch_manual.pdf)) is also attached to the latest [release](https://github.com/torognes/vsearch/releases). ## Packages, plugins, and wrappers diff --git a/configure.ac b/configure.ac index d09230e5..16d2880a 100644 --- a/configure.ac +++ b/configure.ac @@ -2,7 +2,7 @@ # Process this file with autoconf to produce a configure script. AC_PREREQ([2.63]) -AC_INIT([vsearch], [2.15.1], [torognes@ifi.uio.no], [vsearch], [https://github.com/torognes/vsearch]) +AC_INIT([vsearch], [2.15.2], [torognes@ifi.uio.no], [vsearch], [https://github.com/torognes/vsearch]) AC_CANONICAL_TARGET AM_INIT_AUTOMAKE([subdir-objects]) AC_LANG([C++]) diff --git a/man/vsearch.1 b/man/vsearch.1 index e641d842..693a698d 100644 --- a/man/vsearch.1 +++ b/man/vsearch.1 @@ -1,5 +1,5 @@ .\" ============================================================================ -.TH vsearch 1 "January 26, 2021" "version 2.15.1" "USER COMMANDS" +.TH vsearch 1 "January 26, 2021" "version 2.15.2" "USER COMMANDS" .\" ============================================================================ .SH NAME vsearch \(em chimera detection, clustering, dereplication and @@ -4299,6 +4299,14 @@ headers. Make some extra checks when loading compression libraries and add more diagnostic output about them to the output of the version command. Report an error when fastx_filter is used with FASTA input and options that require FASTQ input. Update manual. +.TP +.BR v2.15.2\~ "released January 26th, 2021" +No real functional changes, but some code and compilation +changes. Compiles successfully on macOS running on Apple Silicon +(ARMv8). Binaries available. Code updated for C++11. Minor +adaptations for Windows compatibility, including the use of the C++ +standard library for regular expressions. Minor changes for +compatibility with Power8. Switch to C++ header files. .LP .\" ============================================================================ .\" TODO: