#(Collaborative) Scientific Writing and Reproducible Research
Mathias C. Walter, M.Sc.
Bioinformatican
Technische Universität München
Word, Markdown, LaTeX, Wiki, Dropbox, Version Control System (VCS) like GitHub.
- Notifybox provides Check-in / Check-out of MS Office documents and logs user interactions with files (Windows-only).
Not all tools can import several references at once (e.g. from the search results of a PubMed search), which would be a big time saver. Mendeley and Zotero allow you to do this.
- Gonzo is lightweight desktop markdown editor built using Adobe Air, AS3, and Flex 4.5.
- MarkdownPad
- WriteMonkey
- GitHub for Windows GitHub for Non-Programmers and Windows users! ;-)
- SparkleShare File sync ala DropBox but using a git server as backend.
- How to ditch Word
- Mastering Markdown: 30 Resources, Apps and Tutorials to Get You Started
- Writing papers using R Markdown
- stypi_ An online realtime collaboration editor
- SpanDeX LaTeX based online collaboration writing platform
- smb_git git: A powerful tool to facilitate greater reproducibility and transparency in science.