diff --git a/revdep/README.md b/revdep/README.md
index 2018c6f4e1..f33e525c66 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -1,84 +1,111 @@
# Revdeps
-## Failed to check (64)
+## Failed to check (97)
-|package |version |error |warning |note |
-|:--------------------------|:-------|:------|:-------|:----|
-|NA |? | | | |
-|beadplexr |? | | | |
-|CausalImpact |? | | | |
-|CensMFM |? | | | |
-|cinaR |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|ctsem |3.7.6 |1 | | |
-|NA |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|genekitr |? | | | |
-|[ggh4x](failures.md#ggh4x) |0.2.3 |__+1__ | | |
-|NA |? | | | |
-|glmmPen |1.5.3.0 |1 | | |
-|grandR |? | | | |
-|immcp |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|loon.ggplot |? | | | |
-|MACP |? | | | |
-|NA |? | | | |
-|MarketMatching |? | | | |
-|MARVEL |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|nlmixr2rpt |? | | | |
-|numbat |? | | | |
-|NA |? | | | |
-|OlinkAnalyze |? | | | |
-|OpenMx |? | | | |
-|Platypus |? | | | |
-|PsychWordVec |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|RcppCensSpatial |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|rstan |2.21.8 |1 | | |
-|RVA |? | | | |
-|rxode2 |2.0.11 |1 | |1 |
-|NA |? | | | |
-|SCpubr |? | | | |
-|tidySEM |? | | | |
-|NA |? | | | |
-|tinyarray |? | | | |
-|valse |0.1-0 |1 | | |
-|NA |? | | | |
-|NA |? | | | |
-|vivid |? | | | |
-|NA |? | | | |
-|NA |? | | | |
-|NA |? | | | |
+|package |version |error |warning |note |
+|:---------------|:-------|:-----|:-------|:----|
+|NA |? | | | |
+|NA |? | | | |
+|ale |0.1.0 |1 | | |
+|aPEAR |? | | | |
+|NA |? | | | |
+|bayesdfa |1.2.0 |1 | | |
+|NA |? | | | |
+|BrailleR |1.0.2 |1 | | |
+|NA |? | | | |
+|CausalImpact |? | | | |
+|CensMFM |? | | | |
+|cinaR |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|fdacluster |0.3.0 |1 | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|genekitr |? | | | |
+|NA |? | | | |
+|ggPMX |? | | | |
+|NA |? | | | |
+|grandR |? | | | |
+|HeckmanEM |? | | | |
+|immcp |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|loon.ggplot |? | | | |
+|MACP |? | | | |
+|NA |? | | | |
+|MarketMatching |? | | | |
+|MARVEL |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|MSclassifR |? | | | |
+|nlmixr2 |? | | | |
+|nlmixr2extra |? | | | |
+|nlmixr2plot |? | | | |
+|nlmixr2rpt |? | | | |
+|NA |? | | | |
+|numbat |? | | | |
+|NA |? | | | |
+|oHMMed |? | | | |
+|OlinkAnalyze |? | | | |
+|OpenMx |? | | | |
+|phylosem |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|PsychWordVec |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|RcppCensSpatial |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|rmsb |1.0-0 |1 | | |
+|rstanarm |2.26.1 |1 | | |
+|NA |? | | | |
+|RVA |? | | | |
+|NA |? | | | |
+|SCpubr |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|SSVS |? | | | |
+|streamDAG |? | | | |
+|TestAnaAPP |? | | | |
+|tidySEM |? | | | |
+|NA |? | | | |
+|tinyarray |? | | | |
+|TOmicsVis |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|valse |0.1-0 |1 | | |
+|NA |? | | | |
+|NA |? | | | |
+|vivid |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|xpose.nlmixr2 |? | | | |
+|NA |? | | | |
-## New problems (8)
+## New problems (2)
-|package |version |error |warning |note |
-|:--------------------------------------|:-------|:------|:-------|:----|
-|[afex](problems.md#afex) |1.2-1 | |__+1__ | |
-|[dalmatian](problems.md#dalmatian) |1.0.0 | |__+1__ | |
-|[DriveML](problems.md#driveml) |0.1.5 | |__+1__ |1 |
-|[EcoEnsemble](problems.md#ecoensemble) |1.0.2 | |__+1__ |3 |
-|[ggtern](problems.md#ggtern) |3.4.1 | |__+1__ |2 |
-|[siland](problems.md#siland) |2.0.5 | |__+1__ | |
-|[TCIU](problems.md#tciu) |1.2.2 | |__+1__ |1 |
-|[xpose](problems.md#xpose) |0.4.15 |__+1__ | | |
+|package |version |error |warning |note |
+|:--------------------------------|:-------|:------|:-------|:----|
+|[jfa](problems.md#jfa) |0.7.0 | |__+1__ |3 |
+|[SCORPIUS](problems.md#scorpius) |1.0.9 |__+1__ | | |
diff --git a/revdep/cran.md b/revdep/cran.md
index 4ad01b49d2..ca9d093bbe 100644
--- a/revdep/cran.md
+++ b/revdep/cran.md
@@ -1,67 +1,62 @@
## revdepcheck results
-We checked 4503 reverse dependencies (4468 from CRAN + 35 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 4771 reverse dependencies (4716 from CRAN + 55 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
- * We saw 8 new problems
- * We failed to check 29 packages
+ * We saw 2 new problems
+ * We failed to check 42 packages
Issues with CRAN packages are summarised below.
### New problems
(This reports the first line of each new failure)
-* afex
+* jfa
checking re-building of vignette outputs ... WARNING
-* dalmatian
- checking re-building of vignette outputs ... WARNING
-
-* DriveML
- checking re-building of vignette outputs ... WARNING
-
-* EcoEnsemble
- checking re-building of vignette outputs ... WARNING
-
-* ggtern
- checking Rd files ... WARNING
-
-* siland
- checking re-building of vignette outputs ... WARNING
-
-* TCIU
- checking re-building of vignette outputs ... WARNING
-
-* xpose
+* SCORPIUS
checking tests ... ERROR
### Failed to check
-* beadplexr (NA)
+* ale (NA)
+* aPEAR (NA)
+* bayesdfa (NA)
+* BrailleR (NA)
* CausalImpact (NA)
* CensMFM (NA)
* cinaR (NA)
-* ctsem (NA)
+* fdacluster (NA)
* genekitr (NA)
-* ggh4x (NA)
-* glmmPen (NA)
+* ggPMX (NA)
* grandR (NA)
+* HeckmanEM (NA)
* immcp (NA)
* loon.ggplot (NA)
* MACP (NA)
* MarketMatching (NA)
* MARVEL (NA)
+* MSclassifR (NA)
+* nlmixr2 (NA)
+* nlmixr2extra (NA)
+* nlmixr2plot (NA)
* nlmixr2rpt (NA)
* numbat (NA)
+* oHMMed (NA)
* OlinkAnalyze (NA)
* OpenMx (NA)
-* Platypus (NA)
+* phylosem (NA)
* PsychWordVec (NA)
* RcppCensSpatial (NA)
-* rstan (NA)
+* rmsb (NA)
+* rstanarm (NA)
* RVA (NA)
-* rxode2 (NA)
* SCpubr (NA)
+* SSVS (NA)
+* streamDAG (NA)
+* TestAnaAPP (NA)
* tidySEM (NA)
* tinyarray (NA)
+* TOmicsVis (NA)
* valse (NA)
* vivid (NA)
+* xpose.nlmixr2 (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
index 389a61d7e6..74fbd69701 100644
--- a/revdep/failures.md
+++ b/revdep/failures.md
@@ -33,17 +33,16 @@ Run `cloud_details(, "NA")` for more info
```
-# beadplexr
+# NA
-* Version: 0.4.1
+* Version: NA
* GitHub: NA
-* Source code: https://github.com/cran/beadplexr
-* Date/Publication: 2022-03-05 13:50:02 UTC
-* Number of recursive dependencies: 128
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "beadplexr")` for more info
+Run `cloud_details(, "NA")` for more info
@@ -52,27 +51,7 @@ Run `cloud_details(, "beadplexr")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/beadplexr/new/beadplexr.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘beadplexr/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘beadplexr’ version ‘0.4.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
- Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘cba_macsplex_example.Rmd’ using ‘UTF-8’... OK
- ‘legendplex_analysis.Rmd’ using ‘UTF-8’... OK
- ‘preparing_flow_data.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
+
@@ -82,108 +61,82 @@ Status: 1 NOTE
### CRAN
```
-* using log directory ‘/tmp/workdir/beadplexr/old/beadplexr.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘beadplexr/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘beadplexr’ version ‘0.4.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
- Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘cba_macsplex_example.Rmd’ using ‘UTF-8’... OK
- ‘legendplex_analysis.Rmd’ using ‘UTF-8’... OK
- ‘preparing_flow_data.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
+
```
-# CausalImpact
+# ale
-* Version: 1.3.0
-* GitHub: NA
-* Source code: https://github.com/cran/CausalImpact
-* Date/Publication: 2022-11-09 08:40:40 UTC
-* Number of recursive dependencies: 79
+* Version: 0.1.0
+* GitHub: https://github.com/Tripartio/ale
+* Source code: https://github.com/cran/ale
+* Date/Publication: 2023-08-29 16:30:15 UTC
+* Number of recursive dependencies: 76
-Run `cloud_details(, "CausalImpact")` for more info
+Run `cloud_details(, "ale")` for more info
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/CausalImpact/new/CausalImpact.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
-* this is package ‘CausalImpact’ version ‘1.3.0’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'bsts', 'Boom'
+## In both
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
+* checking whether package ‘ale’ can be installed ... ERROR
+ ```
+ Installation failed.
+ See ‘/tmp/workdir/ale/new/ale.Rcheck/00install.out’ for details.
+ ```
+## Installation
+### Devel
+```
+* installing *source* package ‘ale’ ...
+** package ‘ale’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+Error in parse(outFile) :
+ /tmp/workdir/ale/new/ale.Rcheck/00_pkg_src/ale/R/ale_core.R:720:22: unexpected input
+719: }) |>
+720: c(0, y = _
+ ^
+ERROR: unable to collate and parse R files for package ‘ale’
+* removing ‘/tmp/workdir/ale/new/ale.Rcheck/ale’
```
### CRAN
```
-* using log directory ‘/tmp/workdir/CausalImpact/old/CausalImpact.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
-* this is package ‘CausalImpact’ version ‘1.3.0’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'bsts', 'Boom'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
+* installing *source* package ‘ale’ ...
+** package ‘ale’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+Error in parse(outFile) :
+ /tmp/workdir/ale/old/ale.Rcheck/00_pkg_src/ale/R/ale_core.R:720:22: unexpected input
+719: }) |>
+720: c(0, y = _
+ ^
+ERROR: unable to collate and parse R files for package ‘ale’
+* removing ‘/tmp/workdir/ale/old/ale.Rcheck/ale’
```
-# CensMFM
+# aPEAR
-* Version: 3.0
+* Version: 1.0.0
* GitHub: NA
-* Source code: https://github.com/cran/CensMFM
-* Date/Publication: 2023-01-30 14:00:10 UTC
-* Number of recursive dependencies: 41
+* Source code: https://github.com/cran/aPEAR
+* Date/Publication: 2023-06-12 18:10:13 UTC
+* Number of recursive dependencies: 169
-Run `cloud_details(, "CensMFM")` for more info
+Run `cloud_details(, "aPEAR")` for more info
@@ -192,23 +145,27 @@ Run `cloud_details(, "CensMFM")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/CensMFM/new/CensMFM.Rcheck’
+* using log directory ‘/tmp/workdir/aPEAR/new/aPEAR.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘CensMFM/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘CensMFM’ version ‘3.0’
+* checking for file ‘aPEAR/DESCRIPTION’ ... OK
+* this is package ‘aPEAR’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'MomTrunc', 'tlrmvnmvt'
+* checking package dependencies ... NOTE
+...
+--- failed re-building ‘aPEAR-vignette.Rmd’
+
+SUMMARY: processing the following file failed:
+ ‘aPEAR-vignette.Rmd’
+
+Error: Vignette re-building failed.
+Execution halted
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
* DONE
-Status: 1 ERROR
+Status: 1 WARNING, 1 NOTE
@@ -218,40 +175,43 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/CensMFM/old/CensMFM.Rcheck’
+* using log directory ‘/tmp/workdir/aPEAR/old/aPEAR.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘CensMFM/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘CensMFM’ version ‘3.0’
+* checking for file ‘aPEAR/DESCRIPTION’ ... OK
+* this is package ‘aPEAR’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'MomTrunc', 'tlrmvnmvt'
+* checking package dependencies ... NOTE
+...
+--- failed re-building ‘aPEAR-vignette.Rmd’
+
+SUMMARY: processing the following file failed:
+ ‘aPEAR-vignette.Rmd’
+
+Error: Vignette re-building failed.
+Execution halted
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
* DONE
-Status: 1 ERROR
+Status: 1 WARNING, 1 NOTE
```
-# cinaR
+# NA
-* Version: 0.2.3
-* GitHub: https://github.com/eonurk/cinaR
-* Source code: https://github.com/cran/cinaR
-* Date/Publication: 2022-05-18 14:00:09 UTC
-* Number of recursive dependencies: 179
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "cinaR")` for more info
+Run `cloud_details(, "NA")` for more info
@@ -260,23 +220,7 @@ Run `cloud_details(, "cinaR")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/cinaR/new/cinaR.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘cinaR/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘cinaR’ version ‘0.2.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ChIPseeker’
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
@@ -286,61 +230,88 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/cinaR/old/cinaR.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘cinaR/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘cinaR’ version ‘0.2.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ChIPseeker’
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
```
-# NA
+# bayesdfa
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
+* Version: 1.2.0
+* GitHub: https://github.com/fate-ewi/bayesdfa
+* Source code: https://github.com/cran/bayesdfa
+* Date/Publication: 2021-09-28 13:20:02 UTC
+* Number of recursive dependencies: 86
-Run `cloud_details(, "NA")` for more info
+Run `cloud_details(, "bayesdfa")` for more info
-## Error before installation
+## In both
-### Devel
+* checking whether package ‘bayesdfa’ can be installed ... ERROR
+ ```
+ Installation failed.
+ See ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/00install.out’ for details.
+ ```
-```
+## Installation
+### Devel
+```
+* installing *source* package ‘bayesdfa’ ...
+** package ‘bayesdfa’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+g++ -std=gnu++17 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.1.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.1.1/lib/R/site-library/rstan/include' -I'/opt/R/4.1.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.1.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+In file included from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
+ from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
+ from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:30,
+...
+/opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
+/opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
+/opt/R/4.1.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
+/opt/R/4.1.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here
+/opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stanExports_dfa.o] Error 1
+ERROR: compilation failed for package ‘bayesdfa’
+* removing ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/bayesdfa’
```
### CRAN
```
+* installing *source* package ‘bayesdfa’ ...
+** package ‘bayesdfa’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
-
-
+g++ -std=gnu++17 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.1.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.1.1/lib/R/site-library/rstan/include' -I'/opt/R/4.1.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.1.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+In file included from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
+ from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
+ from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:30,
+...
+/opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’
+/opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’
+/opt/R/4.1.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
+/opt/R/4.1.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here
+/opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes]
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stanExports_dfa.o] Error 1
+ERROR: compilation failed for package ‘bayesdfa’
+* removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’
```
@@ -379,26 +350,26 @@ Run `cloud_details(, "NA")` for more info
```
-# ctsem
+# BrailleR
-* Version: 3.7.6
-* GitHub: https://github.com/cdriveraus/ctsem
-* Source code: https://github.com/cran/ctsem
-* Date/Publication: 2023-03-26 17:10:02 UTC
-* Number of recursive dependencies: 137
+* Version: 1.0.2
+* GitHub: https://github.com/ajrgodfrey/BrailleR
+* Source code: https://github.com/cran/BrailleR
+* Date/Publication: 2023-07-10 19:10:12 UTC
+* Number of recursive dependencies: 196
-Run `cloud_details(, "ctsem")` for more info
+Run `cloud_details(, "BrailleR")` for more info
## In both
-* checking whether package ‘ctsem’ can be installed ... ERROR
+* checking whether package ‘BrailleR’ can be installed ... ERROR
```
Installation failed.
- See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details.
+ See ‘/tmp/workdir/BrailleR/new/BrailleR.Rcheck/00install.out’ for details.
```
## Installation
@@ -406,54 +377,34 @@ Run `cloud_details(, "ctsem")` for more info
### Devel
```
-* installing *source* package ‘ctsem’ ...
-** package ‘ctsem’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘BrailleR’ ...
+** package ‘BrailleR’ successfully unpacked and MD5 sums checked
** using staged installation
-DIAGNOSTIC(S) FROM PARSER:
-Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
- Positive values rounded down, negative values rounded up or down in platform-dependent way.
-Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
- Positive values rounded down, negative values rounded up or down in platform-dependent way.
-
-DIAGNOSTIC(S) FROM PARSER:
-...
-In file included from stanExports_ctsm.cc:5:
-stanExports_ctsm.h: In member function ‘T__ model_ctsm_namespace::model_ctsm::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = true; T__ = double]’:
-stanExports_ctsm.h:2091:9: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
- 2091 | T__ log_prob(std::vector& params_r__,
- | ^~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stanExports_ctsm.o] Error 1
-ERROR: compilation failed for package ‘ctsem’
-* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’
+** R
+Error in parse(outFile) :
+ /tmp/workdir/BrailleR/new/BrailleR.Rcheck/00_pkg_src/BrailleR/R/AddXMLInternal.R:398:48: unexpected input
+397: group_split() |>
+398: Filter(function(x) nrow(x) >= 2, x = _
+ ^
+ERROR: unable to collate and parse R files for package ‘BrailleR’
+* removing ‘/tmp/workdir/BrailleR/new/BrailleR.Rcheck/BrailleR’
```
### CRAN
```
-* installing *source* package ‘ctsem’ ...
-** package ‘ctsem’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘BrailleR’ ...
+** package ‘BrailleR’ successfully unpacked and MD5 sums checked
** using staged installation
-DIAGNOSTIC(S) FROM PARSER:
-Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
- Positive values rounded down, negative values rounded up or down in platform-dependent way.
-Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
- Positive values rounded down, negative values rounded up or down in platform-dependent way.
-
-DIAGNOSTIC(S) FROM PARSER:
-...
-In file included from stanExports_ctsm.cc:5:
-stanExports_ctsm.h: In member function ‘T__ model_ctsm_namespace::model_ctsm::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = true; T__ = double]’:
-stanExports_ctsm.h:2091:9: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
- 2091 | T__ log_prob(std::vector& params_r__,
- | ^~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stanExports_ctsm.o] Error 1
-ERROR: compilation failed for package ‘ctsem’
-* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’
+** R
+Error in parse(outFile) :
+ /tmp/workdir/BrailleR/old/BrailleR.Rcheck/00_pkg_src/BrailleR/R/AddXMLInternal.R:398:48: unexpected input
+397: group_split() |>
+398: Filter(function(x) nrow(x) >= 2, x = _
+ ^
+ERROR: unable to collate and parse R files for package ‘BrailleR’
+* removing ‘/tmp/workdir/BrailleR/old/BrailleR.Rcheck/BrailleR’
```
@@ -492,16 +443,17 @@ Run `cloud_details(, "NA")` for more info
```
-# NA
+# CausalImpact
-* Version: NA
+* Version: 1.3.0
* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
+* Source code: https://github.com/cran/CausalImpact
+* Date/Publication: 2022-11-09 08:40:40 UTC
+* Number of recursive dependencies: 81
-Run `cloud_details(, "NA")` for more info
+Run `cloud_details(, "CausalImpact")` for more info
@@ -510,7 +462,21 @@ Run `cloud_details(, "NA")` for more info
### Devel
```
+* using log directory ‘/tmp/workdir/CausalImpact/new/CausalImpact.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
+* this is package ‘CausalImpact’ version ‘1.3.0’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'bsts', 'Boom'
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
@@ -520,23 +486,38 @@ Run `cloud_details(, "NA")` for more info
### CRAN
```
+* using log directory ‘/tmp/workdir/CausalImpact/old/CausalImpact.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
+* this is package ‘CausalImpact’ version ‘1.3.0’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'bsts', 'Boom'
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
```
-# NA
+# CensMFM
-* Version: NA
+* Version: 3.0
* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
+* Source code: https://github.com/cran/CensMFM
+* Date/Publication: 2023-01-30 14:00:10 UTC
+* Number of recursive dependencies: 41
-Run `cloud_details(, "NA")` for more info
+Run `cloud_details(, "CensMFM")` for more info
@@ -545,7 +526,23 @@ Run `cloud_details(, "NA")` for more info
### Devel
```
+* using log directory ‘/tmp/workdir/CensMFM/new/CensMFM.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘CensMFM/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘CensMFM’ version ‘3.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'MomTrunc', 'tlrmvnmvt'
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
@@ -555,23 +552,40 @@ Run `cloud_details(, "NA")` for more info
### CRAN
```
+* using log directory ‘/tmp/workdir/CensMFM/old/CensMFM.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘CensMFM/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘CensMFM’ version ‘3.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'MomTrunc', 'tlrmvnmvt'
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
```
-# NA
+# cinaR
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
+* Version: 0.2.3
+* GitHub: https://github.com/eonurk/cinaR
+* Source code: https://github.com/cran/cinaR
+* Date/Publication: 2022-05-18 14:00:09 UTC
+* Number of recursive dependencies: 179
-Run `cloud_details(, "NA")` for more info
+Run `cloud_details(, "cinaR")` for more info
@@ -580,7 +594,23 @@ Run `cloud_details(, "NA")` for more info
### Devel
```
+* using log directory ‘/tmp/workdir/cinaR/new/cinaR.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘cinaR/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘cinaR’ version ‘0.2.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘ChIPseeker’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
@@ -590,7 +620,23 @@ Run `cloud_details(, "NA")` for more info
### CRAN
```
+* using log directory ‘/tmp/workdir/cinaR/old/cinaR.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘cinaR/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘cinaR’ version ‘0.2.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘ChIPseeker’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
@@ -772,17 +818,16 @@ Run `cloud_details(, "NA")` for more info
```
-# genekitr
+# NA
-* Version: 1.1.5
-* GitHub: https://github.com/GangLiLab/genekitr
-* Source code: https://github.com/cran/genekitr
-* Date/Publication: 2023-03-23 12:22:08 UTC
-* Number of recursive dependencies: 206
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "genekitr")` for more info
+Run `cloud_details(, "NA")` for more info
@@ -791,23 +836,7 @@ Run `cloud_details(, "genekitr")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/genekitr/new/genekitr.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘genekitr/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘genekitr’ version ‘1.1.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
@@ -817,89 +846,45 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/genekitr/old/genekitr.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘genekitr/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘genekitr’ version ‘1.1.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
```
-# ggh4x
+# NA
-* Version: 0.2.3
-* GitHub: https://github.com/teunbrand/ggh4x
-* Source code: https://github.com/cran/ggh4x
-* Date/Publication: 2022-11-09 08:40:24 UTC
-* Number of recursive dependencies: 79
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "ggh4x")` for more info
+Run `cloud_details(, "NA")` for more info
-## Newly broken
-
-* checking whether package ‘ggh4x’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ggh4x/new/ggh4x.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘ggh4x’ ...
-** package ‘ggh4x’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in get(x, envir = ns, inherits = FALSE) :
- object 'continuous_range' not found
-Error: unable to load R code in package ‘ggh4x’
-Execution halted
-ERROR: lazy loading failed for package ‘ggh4x’
-* removing ‘/tmp/workdir/ggh4x/new/ggh4x.Rcheck/ggh4x’
+
+
+
+
```
### CRAN
```
-* installing *source* package ‘ggh4x’ ...
-** package ‘ggh4x’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-*** copying figures
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (ggh4x)
+
+
+
+
```
@@ -938,69 +923,51 @@ Run `cloud_details(, "NA")` for more info
```
-# glmmPen
+# NA
-* Version: 1.5.3.0
+* Version: NA
* GitHub: NA
-* Source code: https://github.com/cran/glmmPen
-* Date/Publication: 2023-03-15 14:50:07 UTC
-* Number of recursive dependencies: 94
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "glmmPen")` for more info
+Run `cloud_details(, "NA")` for more info
-## In both
-
-* checking whether package ‘glmmPen’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/glmmPen/new/glmmPen.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘glmmPen’ ...
-** package ‘glmmPen’ successfully unpacked and MD5 sums checked
-** using staged installation
-Error in loadNamespace(x) : there is no package called ‘rstantools’
-Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: configuration failed for package ‘glmmPen’
-* removing ‘/tmp/workdir/glmmPen/new/glmmPen.Rcheck/glmmPen’
+
+
+
+
```
### CRAN
```
-* installing *source* package ‘glmmPen’ ...
-** package ‘glmmPen’ successfully unpacked and MD5 sums checked
-** using staged installation
-Error in loadNamespace(x) : there is no package called ‘rstantools’
-Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: configuration failed for package ‘glmmPen’
-* removing ‘/tmp/workdir/glmmPen/old/glmmPen.Rcheck/glmmPen’
+
+
+
+
```
-# grandR
+# NA
-* Version: 0.2.1
-* GitHub: https://github.com/erhard-lab/grandR
-* Source code: https://github.com/cran/grandR
-* Date/Publication: 2023-02-27 09:32:39 UTC
-* Number of recursive dependencies: 260
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "grandR")` for more info
+Run `cloud_details(, "NA")` for more info
@@ -1009,27 +976,7 @@ Run `cloud_details(, "grandR")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/grandR/new/grandR.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘grandR/DESCRIPTION’ ... OK
-* this is package ‘grandR’ version ‘0.2.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... NOTE
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘getting-started.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 2 NOTEs
+
@@ -1039,96 +986,88 @@ Status: 2 NOTEs
### CRAN
```
-* using log directory ‘/tmp/workdir/grandR/old/grandR.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘grandR/DESCRIPTION’ ... OK
-* this is package ‘grandR’ version ‘0.2.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... NOTE
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘getting-started.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 2 NOTEs
+
```
-# immcp
+# fdacluster
-* Version: 1.0.3
-* GitHub: https://github.com/YuanlongHu/immcp
-* Source code: https://github.com/cran/immcp
-* Date/Publication: 2022-05-12 05:50:02 UTC
-* Number of recursive dependencies: 195
+* Version: 0.3.0
+* GitHub: https://github.com/astamm/fdacluster
+* Source code: https://github.com/cran/fdacluster
+* Date/Publication: 2023-07-04 15:53:04 UTC
+* Number of recursive dependencies: 121
-Run `cloud_details(, "immcp")` for more info
+Run `cloud_details(, "fdacluster")` for more info
-## Error before installation
+## In both
+
+* checking whether package ‘fdacluster’ can be installed ... ERROR
+ ```
+ Installation failed.
+ See ‘/tmp/workdir/fdacluster/new/fdacluster.Rcheck/00install.out’ for details.
+ ```
+
+## Installation
### Devel
```
-* using log directory ‘/tmp/workdir/immcp/new/immcp.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘immcp/DESCRIPTION’ ... OK
-* this is package ‘immcp’ version ‘1.0.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
+* installing *source* package ‘fdacluster’ ...
+** package ‘fdacluster’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c affineWarpingClass.cpp -o affineWarpingClass.o
+g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c baseDissimilarityClass.cpp -o baseDissimilarityClass.o
+g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c baseOptimizerClass.cpp -o baseOptimizerClass.o
+g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c baseWarpingClass.cpp -o baseWarpingClass.o
+g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c bobyqaOptimizerClass.cpp -o bobyqaOptimizerClass.o
+...
+g++ -std=gnu++14 -shared -L/opt/R/4.1.1/lib/R/lib -L/usr/local/lib -o fdacluster.so RcppExports.o affineWarpingClass.o baseDissimilarityClass.o baseOptimizerClass.o baseWarpingClass.o bobyqaOptimizerClass.o dilationWarpingClass.o kmaModelClass.o kmap.o kumaraswamyWarpingClass.o l2DissimilarityClass.o lowessCenterClass.o meanCenterClass.o medianCenterClass.o medoidCenterClass.o noWarpingClass.o pearsonDissimilarityClass.o polyCenterClass.o shiftWarpingClass.o utilityFunctions.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.1.1/lib/R/lib -lR
+installing to /tmp/workdir/fdacluster/new/fdacluster.Rcheck/00LOCK-fdacluster/00new/fdacluster/libs
+** R
+Error in parse(outFile) :
+ /tmp/workdir/fdacluster/new/fdacluster.Rcheck/00_pkg_src/fdacluster/R/utils.R:132:31: unexpected input
+131: purrr::imap(\(values, id) stats::approx(x@argvals[[id]], values, n = M)$y) |>
+132: do.call(rbind, args = _
+ ^
+ERROR: unable to collate and parse R files for package ‘fdacluster’
+* removing ‘/tmp/workdir/fdacluster/new/fdacluster.Rcheck/fdacluster’
```
### CRAN
```
-* using log directory ‘/tmp/workdir/immcp/old/immcp.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘immcp/DESCRIPTION’ ... OK
-* this is package ‘immcp’ version ‘1.0.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
+* installing *source* package ‘fdacluster’ ...
+** package ‘fdacluster’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
+g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c affineWarpingClass.cpp -o affineWarpingClass.o
+g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c baseDissimilarityClass.cpp -o baseDissimilarityClass.o
+g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c baseOptimizerClass.cpp -o baseOptimizerClass.o
+g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c baseWarpingClass.cpp -o baseWarpingClass.o
+g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I../inst/include -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/nloptr/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c bobyqaOptimizerClass.cpp -o bobyqaOptimizerClass.o
+...
+g++ -std=gnu++14 -shared -L/opt/R/4.1.1/lib/R/lib -L/usr/local/lib -o fdacluster.so RcppExports.o affineWarpingClass.o baseDissimilarityClass.o baseOptimizerClass.o baseWarpingClass.o bobyqaOptimizerClass.o dilationWarpingClass.o kmaModelClass.o kmap.o kumaraswamyWarpingClass.o l2DissimilarityClass.o lowessCenterClass.o meanCenterClass.o medianCenterClass.o medoidCenterClass.o noWarpingClass.o pearsonDissimilarityClass.o polyCenterClass.o shiftWarpingClass.o utilityFunctions.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.1.1/lib/R/lib -lR
+installing to /tmp/workdir/fdacluster/old/fdacluster.Rcheck/00LOCK-fdacluster/00new/fdacluster/libs
+** R
+Error in parse(outFile) :
+ /tmp/workdir/fdacluster/old/fdacluster.Rcheck/00_pkg_src/fdacluster/R/utils.R:132:31: unexpected input
+131: purrr::imap(\(values, id) stats::approx(x@argvals[[id]], values, n = M)$y) |>
+132: do.call(rbind, args = _
+ ^
+ERROR: unable to collate and parse R files for package ‘fdacluster’
+* removing ‘/tmp/workdir/fdacluster/old/fdacluster.Rcheck/fdacluster’
```
@@ -1237,17 +1176,17 @@ Run `cloud_details(, "NA")` for more info
```
-# loon.ggplot
+# genekitr
-* Version: 1.3.3
-* GitHub: https://github.com/great-northern-diver/loon.ggplot
-* Source code: https://github.com/cran/loon.ggplot
-* Date/Publication: 2022-11-12 22:30:02 UTC
-* Number of recursive dependencies: 105
+* Version: 1.2.5
+* GitHub: https://github.com/GangLiLab/genekitr
+* Source code: https://github.com/cran/genekitr
+* Date/Publication: 2023-09-07 08:50:09 UTC
+* Number of recursive dependencies: 211
-Run `cloud_details(, "loon.ggplot")` for more info
+Run `cloud_details(, "genekitr")` for more info
@@ -1256,20 +1195,18 @@ Run `cloud_details(, "loon.ggplot")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’
+* using log directory ‘/tmp/workdir/genekitr/new/genekitr.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
+* checking for file ‘genekitr/DESCRIPTION’ ... OK
* checking extension type ... Package
-* this is package ‘loon.ggplot’ version ‘1.3.3’
+* this is package ‘genekitr’ version ‘1.2.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Package required but not available: ‘loon’
-
-Package suggested but not available for checking: ‘zenplots’
+Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -1284,20 +1221,18 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’
+* using log directory ‘/tmp/workdir/genekitr/old/genekitr.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
+* checking for file ‘genekitr/DESCRIPTION’ ... OK
* checking extension type ... Package
-* this is package ‘loon.ggplot’ version ‘1.3.3’
+* this is package ‘genekitr’ version ‘1.2.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Package required but not available: ‘loon’
-
-Package suggested but not available for checking: ‘zenplots’
+Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -1309,17 +1244,16 @@ Status: 1 ERROR
```
-# MACP
+# NA
-* Version: 0.1.0
-* GitHub: https://github.com/mrbakhsh/MACP
-* Source code: https://github.com/cran/MACP
-* Date/Publication: 2023-02-28 17:32:30 UTC
-* Number of recursive dependencies: 232
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "MACP")` for more info
+Run `cloud_details(, "NA")` for more info
@@ -1328,27 +1262,63 @@ Run `cloud_details(, "MACP")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/MACP/new/MACP.Rcheck’
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# ggPMX
+
+
+
+* Version: 1.2.10
+* GitHub: https://github.com/ggPMXdevelopment/ggPMX
+* Source code: https://github.com/cran/ggPMX
+* Date/Publication: 2023-06-16 23:20:07 UTC
+* Number of recursive dependencies: 177
+
+Run `cloud_details(, "ggPMX")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/ggPMX/new/ggPMX.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘MACP/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘MACP’ version ‘0.1.0’
+* checking for file ‘ggPMX/DESCRIPTION’ ... OK
+* this is package ‘ggPMX’ version ‘1.2.10’
* package encoding: UTF-8
* checking package namespace information ... OK
+* checking package dependencies ... NOTE
...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
- ‘MACP_tutorial.Rmd’ using ‘UTF-8’... OK
+ ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
-Status: 3 NOTEs
+Status: 2 NOTEs
@@ -1358,27 +1328,27 @@ Status: 3 NOTEs
### CRAN
```
-* using log directory ‘/tmp/workdir/MACP/old/MACP.Rcheck’
+* using log directory ‘/tmp/workdir/ggPMX/old/ggPMX.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘MACP/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘MACP’ version ‘0.1.0’
+* checking for file ‘ggPMX/DESCRIPTION’ ... OK
+* this is package ‘ggPMX’ version ‘1.2.10’
* package encoding: UTF-8
* checking package namespace information ... OK
+* checking package dependencies ... NOTE
...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
- ‘MACP_tutorial.Rmd’ using ‘UTF-8’... OK
+ ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
-Status: 3 NOTEs
+Status: 2 NOTEs
@@ -1420,17 +1390,17 @@ Run `cloud_details(, "NA")` for more info
```
-# MarketMatching
+# grandR
-* Version: 1.2.0
-* GitHub: NA
-* Source code: https://github.com/cran/MarketMatching
-* Date/Publication: 2021-01-08 20:10:02 UTC
-* Number of recursive dependencies: 74
+* Version: 0.2.2
+* GitHub: https://github.com/erhard-lab/grandR
+* Source code: https://github.com/cran/grandR
+* Date/Publication: 2023-04-20 21:22:30 UTC
+* Number of recursive dependencies: 261
-Run `cloud_details(, "MarketMatching")` for more info
+Run `cloud_details(, "grandR")` for more info
@@ -1439,22 +1409,27 @@ Run `cloud_details(, "MarketMatching")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/MarketMatching/new/MarketMatching.Rcheck’
+* using log directory ‘/tmp/workdir/grandR/new/grandR.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘MarketMatching/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘MarketMatching’ version ‘1.2.0’
+* checking for file ‘grandR/DESCRIPTION’ ... OK
+* this is package ‘grandR’ version ‘0.2.2’
+* package encoding: UTF-8
* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'CausalImpact', 'bsts', 'Boom'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
+* checking package dependencies ... NOTE
+...
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘getting-started.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
* DONE
-Status: 1 ERROR
+Status: 2 NOTEs
@@ -1464,39 +1439,44 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/MarketMatching/old/MarketMatching.Rcheck’
+* using log directory ‘/tmp/workdir/grandR/old/grandR.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘MarketMatching/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘MarketMatching’ version ‘1.2.0’
+* checking for file ‘grandR/DESCRIPTION’ ... OK
+* this is package ‘grandR’ version ‘0.2.2’
+* package encoding: UTF-8
* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'CausalImpact', 'bsts', 'Boom'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
+* checking package dependencies ... NOTE
+...
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘getting-started.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
* DONE
-Status: 1 ERROR
+Status: 2 NOTEs
```
-# MARVEL
+# HeckmanEM
-* Version: 1.4.0
+* Version: 0.2-0
* GitHub: NA
-* Source code: https://github.com/cran/MARVEL
-* Date/Publication: 2022-10-31 10:22:50 UTC
-* Number of recursive dependencies: 236
+* Source code: https://github.com/cran/HeckmanEM
+* Date/Publication: 2023-06-11 15:00:03 UTC
+* Number of recursive dependencies: 95
-Run `cloud_details(, "MARVEL")` for more info
+Run `cloud_details(, "HeckmanEM")` for more info
@@ -1505,27 +1485,23 @@ Run `cloud_details(, "MARVEL")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/MARVEL/new/MARVEL.Rcheck’
+* using log directory ‘/tmp/workdir/HeckmanEM/new/HeckmanEM.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘MARVEL/DESCRIPTION’ ... OK
-* this is package ‘MARVEL’ version ‘1.4.0’
+* checking for file ‘HeckmanEM/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘HeckmanEM’ version ‘0.2-0’
* package encoding: UTF-8
* checking package namespace information ... OK
-* checking package dependencies ... NOTE
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘MARVEL.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MomTrunc’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
* DONE
-Status: 1 NOTE
+Status: 1 ERROR
@@ -1535,43 +1511,40 @@ Status: 1 NOTE
### CRAN
```
-* using log directory ‘/tmp/workdir/MARVEL/old/MARVEL.Rcheck’
+* using log directory ‘/tmp/workdir/HeckmanEM/old/HeckmanEM.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘MARVEL/DESCRIPTION’ ... OK
-* this is package ‘MARVEL’ version ‘1.4.0’
+* checking for file ‘HeckmanEM/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘HeckmanEM’ version ‘0.2-0’
* package encoding: UTF-8
* checking package namespace information ... OK
-* checking package dependencies ... NOTE
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘MARVEL.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MomTrunc’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
* DONE
-Status: 1 NOTE
+Status: 1 ERROR
```
-# NA
+# immcp
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
+* Version: 1.0.3
+* GitHub: https://github.com/YuanlongHu/immcp
+* Source code: https://github.com/cran/immcp
+* Date/Publication: 2022-05-12 05:50:02 UTC
+* Number of recursive dependencies: 198
-Run `cloud_details(, "NA")` for more info
+Run `cloud_details(, "immcp")` for more info
@@ -1580,7 +1553,22 @@ Run `cloud_details(, "NA")` for more info
### Devel
```
+* using log directory ‘/tmp/workdir/immcp/new/immcp.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘immcp/DESCRIPTION’ ... OK
+* this is package ‘immcp’ version ‘1.0.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘clusterProfiler’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
@@ -1590,7 +1578,22 @@ Run `cloud_details(, "NA")` for more info
### CRAN
```
+* using log directory ‘/tmp/workdir/immcp/old/immcp.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘immcp/DESCRIPTION’ ... OK
+* this is package ‘immcp’ version ‘1.0.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘clusterProfiler’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
@@ -1702,17 +1705,17 @@ Run `cloud_details(, "NA")` for more info
```
-# nlmixr2rpt
+# loon.ggplot
-* Version: 0.1.0
-* GitHub: https://github.com/nlmixr2/nlmixr2rpt
-* Source code: https://github.com/cran/nlmixr2rpt
-* Date/Publication: 2022-12-05 10:40:02 UTC
-* Number of recursive dependencies: 218
+* Version: 1.3.3
+* GitHub: https://github.com/great-northern-diver/loon.ggplot
+* Source code: https://github.com/cran/loon.ggplot
+* Date/Publication: 2022-11-12 22:30:02 UTC
+* Number of recursive dependencies: 106
-Run `cloud_details(, "nlmixr2rpt")` for more info
+Run `cloud_details(, "loon.ggplot")` for more info
@@ -1721,20 +1724,20 @@ Run `cloud_details(, "nlmixr2rpt")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/nlmixr2rpt/new/nlmixr2rpt.Rcheck’
+* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘nlmixr2rpt/DESCRIPTION’ ... OK
-* this is package ‘nlmixr2rpt’ version ‘0.1.0’
+* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘loon.ggplot’ version ‘1.3.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Packages required but not available:
- 'nlmixr2extra', 'rxode2', 'xpose.nlmixr2'
+Package required but not available: ‘loon’
-Package suggested but not available for checking: ‘nlmixr2’
+Package suggested but not available for checking: ‘zenplots’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -1749,20 +1752,20 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/nlmixr2rpt/old/nlmixr2rpt.Rcheck’
+* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘nlmixr2rpt/DESCRIPTION’ ... OK
-* this is package ‘nlmixr2rpt’ version ‘0.1.0’
+* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘loon.ggplot’ version ‘1.3.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Packages required but not available:
- 'nlmixr2extra', 'rxode2', 'xpose.nlmixr2'
+Package required but not available: ‘loon’
-Package suggested but not available for checking: ‘nlmixr2’
+Package suggested but not available for checking: ‘zenplots’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -1774,17 +1777,17 @@ Status: 1 ERROR
```
-# numbat
+# MACP
-* Version: 1.2.2
-* GitHub: https://github.com/kharchenkolab/numbat
-* Source code: https://github.com/cran/numbat
-* Date/Publication: 2023-02-14 18:20:02 UTC
-* Number of recursive dependencies: 132
+* Version: 0.1.0
+* GitHub: https://github.com/mrbakhsh/MACP
+* Source code: https://github.com/cran/MACP
+* Date/Publication: 2023-02-28 17:32:30 UTC
+* Number of recursive dependencies: 235
-Run `cloud_details(, "numbat")` for more info
+Run `cloud_details(, "MACP")` for more info
@@ -1793,22 +1796,27 @@ Run `cloud_details(, "numbat")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/numbat/new/numbat.Rcheck’
+* using log directory ‘/tmp/workdir/MACP/new/MACP.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘numbat/DESCRIPTION’ ... OK
-* this is package ‘numbat’ version ‘1.2.2’
+* checking for file ‘MACP/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘MACP’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'ggtree', 'scistreer'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
+...
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘MACP_tutorial.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
* DONE
-Status: 1 ERROR
+Status: 3 NOTEs
@@ -1818,22 +1826,27 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/numbat/old/numbat.Rcheck’
+* using log directory ‘/tmp/workdir/MACP/old/MACP.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘numbat/DESCRIPTION’ ... OK
-* this is package ‘numbat’ version ‘1.2.2’
+* checking for file ‘MACP/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘MACP’ version ‘0.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'ggtree', 'scistreer'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
+...
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘MACP_tutorial.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
* DONE
-Status: 1 ERROR
+Status: 3 NOTEs
@@ -1875,17 +1888,17 @@ Run `cloud_details(, "NA")` for more info
```
-# OlinkAnalyze
+# MarketMatching
-* Version: 3.3.1
+* Version: 1.2.0
* GitHub: NA
-* Source code: https://github.com/cran/OlinkAnalyze
-* Date/Publication: 2023-02-27 20:22:30 UTC
-* Number of recursive dependencies: 203
+* Source code: https://github.com/cran/MarketMatching
+* Date/Publication: 2021-01-08 20:10:02 UTC
+* Number of recursive dependencies: 74
-Run `cloud_details(, "OlinkAnalyze")` for more info
+Run `cloud_details(, "MarketMatching")` for more info
@@ -1894,27 +1907,22 @@ Run `cloud_details(, "OlinkAnalyze")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/OlinkAnalyze/new/OlinkAnalyze.Rcheck’
+* using log directory ‘/tmp/workdir/MarketMatching/new/MarketMatching.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
+* checking for file ‘MarketMatching/DESCRIPTION’ ... OK
* checking extension type ... Package
-* this is package ‘OlinkAnalyze’ version ‘3.3.1’
-* package encoding: UTF-8
+* this is package ‘MarketMatching’ version ‘1.2.0’
* checking package namespace information ... OK
-...
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
- Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘Vignett.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'CausalImpact', 'bsts', 'Boom'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
* DONE
-Status: 1 NOTE
+Status: 1 ERROR
@@ -1924,44 +1932,39 @@ Status: 1 NOTE
### CRAN
```
-* using log directory ‘/tmp/workdir/OlinkAnalyze/old/OlinkAnalyze.Rcheck’
+* using log directory ‘/tmp/workdir/MarketMatching/old/MarketMatching.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
+* checking for file ‘MarketMatching/DESCRIPTION’ ... OK
* checking extension type ... Package
-* this is package ‘OlinkAnalyze’ version ‘3.3.1’
-* package encoding: UTF-8
+* this is package ‘MarketMatching’ version ‘1.2.0’
* checking package namespace information ... OK
-...
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
- Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘Vignett.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'CausalImpact', 'bsts', 'Boom'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
* DONE
-Status: 1 NOTE
+Status: 1 ERROR
```
-# OpenMx
+# MARVEL
-* Version: 2.21.1
-* GitHub: https://github.com/OpenMx/OpenMx
-* Source code: https://github.com/cran/OpenMx
-* Date/Publication: 2023-01-19 23:50:02 UTC
-* Number of recursive dependencies: 147
+* Version: 1.4.0
+* GitHub: NA
+* Source code: https://github.com/cran/MARVEL
+* Date/Publication: 2022-10-31 10:22:50 UTC
+* Number of recursive dependencies: 238
-Run `cloud_details(, "OpenMx")` for more info
+Run `cloud_details(, "MARVEL")` for more info
@@ -1970,27 +1973,27 @@ Run `cloud_details(, "OpenMx")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/OpenMx/new/OpenMx.Rcheck’
+* using log directory ‘/tmp/workdir/MARVEL/new/MARVEL.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘OpenMx/DESCRIPTION’ ... OK
-* this is package ‘OpenMx’ version ‘2.21.1’
+* checking for file ‘MARVEL/DESCRIPTION’ ... OK
+* this is package ‘MARVEL’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
- ‘deriv.Rmd’ using ‘UTF-8’... OK
- ‘reg_mimic.Rmd’ using ‘UTF-8’... OK
- ‘factor_analysis.Rmd’ using ‘UTF-8’... OK
- ‘regularization.Rmd’ using ‘UTF-8’... OK
+ ‘MARVEL.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
-Status: 4 NOTEs
+Status: 2 NOTEs
@@ -2000,44 +2003,43 @@ Status: 4 NOTEs
### CRAN
```
-* using log directory ‘/tmp/workdir/OpenMx/old/OpenMx.Rcheck’
+* using log directory ‘/tmp/workdir/MARVEL/old/MARVEL.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘OpenMx/DESCRIPTION’ ... OK
-* this is package ‘OpenMx’ version ‘2.21.1’
+* checking for file ‘MARVEL/DESCRIPTION’ ... OK
+* this is package ‘MARVEL’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
- ‘deriv.Rmd’ using ‘UTF-8’... OK
- ‘reg_mimic.Rmd’ using ‘UTF-8’... OK
- ‘factor_analysis.Rmd’ using ‘UTF-8’... OK
- ‘regularization.Rmd’ using ‘UTF-8’... OK
+ ‘MARVEL.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
-Status: 4 NOTEs
+Status: 2 NOTEs
```
-# Platypus
+# NA
-* Version: 3.4.1
+* Version: NA
* GitHub: NA
-* Source code: https://github.com/cran/Platypus
-* Date/Publication: 2022-08-15 07:20:20 UTC
-* Number of recursive dependencies: 356
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "Platypus")` for more info
+Run `cloud_details(, "NA")` for more info
@@ -2046,27 +2048,7 @@ Run `cloud_details(, "Platypus")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/Platypus/new/Platypus.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘Platypus/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘Platypus’ version ‘3.4.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-* checking package dependencies ... ERROR
-Package required but not available: ‘ggtree’
-
-Packages suggested but not available for checking:
- 'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers'
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
@@ -2076,44 +2058,23 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/Platypus/old/Platypus.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘Platypus/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘Platypus’ version ‘3.4.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-* checking package dependencies ... ERROR
-Package required but not available: ‘ggtree’
-
-Packages suggested but not available for checking:
- 'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers'
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
```
-# PsychWordVec
+# NA
-* Version: 0.3.2
-* GitHub: https://github.com/psychbruce/PsychWordVec
-* Source code: https://github.com/cran/PsychWordVec
-* Date/Publication: 2023-03-04 16:20:02 UTC
-* Number of recursive dependencies: 229
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "PsychWordVec")` for more info
+Run `cloud_details(, "NA")` for more info
@@ -2122,22 +2083,1682 @@ Run `cloud_details(, "PsychWordVec")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/PsychWordVec/new/PsychWordVec.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# MSclassifR
+
+
+
+* Version: 0.3.3
+* GitHub: https://github.com/agodmer/MSclassifR_examples
+* Source code: https://github.com/cran/MSclassifR
+* Date/Publication: 2023-08-09 09:00:06 UTC
+* Number of recursive dependencies: 230
+
+Run `cloud_details(, "MSclassifR")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/MSclassifR/new/MSclassifR.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘MSclassifR/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘MSclassifR’ version ‘0.3.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'MALDIquantForeign', 'VSURF'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/MSclassifR/old/MSclassifR.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘MSclassifR/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘MSclassifR’ version ‘0.3.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'MALDIquantForeign', 'VSURF'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# nlmixr2
+
+
+
+* Version: 2.0.9
+* GitHub: https://github.com/nlmixr2/nlmixr2
+* Source code: https://github.com/cran/nlmixr2
+* Date/Publication: 2023-02-21 04:00:02 UTC
+* Number of recursive dependencies: 194
+
+Run `cloud_details(, "nlmixr2")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/nlmixr2/new/nlmixr2.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘nlmixr2/DESCRIPTION’ ... OK
+* this is package ‘nlmixr2’ version ‘2.0.9’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available:
+ 'nlmixr2est', 'nlmixr2extra', 'nlmixr2plot'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/nlmixr2/old/nlmixr2.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘nlmixr2/DESCRIPTION’ ... OK
+* this is package ‘nlmixr2’ version ‘2.0.9’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available:
+ 'nlmixr2est', 'nlmixr2extra', 'nlmixr2plot'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# nlmixr2extra
+
+
+
+* Version: 2.0.8
+* GitHub: https://github.com/nlmixr2/nlmixr2extra
+* Source code: https://github.com/cran/nlmixr2extra
+* Date/Publication: 2022-10-22 22:32:34 UTC
+* Number of recursive dependencies: 186
+
+Run `cloud_details(, "nlmixr2extra")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/nlmixr2extra/new/nlmixr2extra.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘nlmixr2extra/DESCRIPTION’ ... OK
+* this is package ‘nlmixr2extra’ version ‘2.0.8’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'nlmixr2est', 'symengine'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/nlmixr2extra/old/nlmixr2extra.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘nlmixr2extra/DESCRIPTION’ ... OK
+* this is package ‘nlmixr2extra’ version ‘2.0.8’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'nlmixr2est', 'symengine'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# nlmixr2plot
+
+
+
+* Version: 2.0.7
+* GitHub: https://github.com/nlmixr2/nlmixr2plot
+* Source code: https://github.com/cran/nlmixr2plot
+* Date/Publication: 2022-10-20 03:12:36 UTC
+* Number of recursive dependencies: 162
+
+Run `cloud_details(, "nlmixr2plot")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/nlmixr2plot/new/nlmixr2plot.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘nlmixr2plot/DESCRIPTION’ ... OK
+* this is package ‘nlmixr2plot’ version ‘2.0.7’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'nlmixr2est', 'nlmixr2extra'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/nlmixr2plot/old/nlmixr2plot.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘nlmixr2plot/DESCRIPTION’ ... OK
+* this is package ‘nlmixr2plot’ version ‘2.0.7’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'nlmixr2est', 'nlmixr2extra'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# nlmixr2rpt
+
+
+
+* Version: 0.2.0
+* GitHub: https://github.com/nlmixr2/nlmixr2rpt
+* Source code: https://github.com/cran/nlmixr2rpt
+* Date/Publication: 2023-06-06 13:10:05 UTC
+* Number of recursive dependencies: 216
+
+Run `cloud_details(, "nlmixr2rpt")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/nlmixr2rpt/new/nlmixr2rpt.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘nlmixr2rpt/DESCRIPTION’ ... OK
+* this is package ‘nlmixr2rpt’ version ‘0.2.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available:
+ 'nlmixr2', 'nlmixr2extra', 'xpose.nlmixr2'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/nlmixr2rpt/old/nlmixr2rpt.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘nlmixr2rpt/DESCRIPTION’ ... OK
+* this is package ‘nlmixr2rpt’ version ‘0.2.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available:
+ 'nlmixr2', 'nlmixr2extra', 'xpose.nlmixr2'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# numbat
+
+
+
+* Version: 1.3.2-1
+* GitHub: https://github.com/kharchenkolab/numbat
+* Source code: https://github.com/cran/numbat
+* Date/Publication: 2023-06-17 18:50:02 UTC
+* Number of recursive dependencies: 136
+
+Run `cloud_details(, "numbat")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/numbat/new/numbat.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘numbat/DESCRIPTION’ ... OK
+* this is package ‘numbat’ version ‘1.3.2-1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'ggtree', 'scistreer'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/numbat/old/numbat.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘numbat/DESCRIPTION’ ... OK
+* this is package ‘numbat’ version ‘1.3.2-1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'ggtree', 'scistreer'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# oHMMed
+
+
+
+* Version: 1.0.0
+* GitHub: https://github.com/LynetteCaitlin/oHMMed
+* Source code: https://github.com/cran/oHMMed
+* Date/Publication: 2023-07-05 14:30:02 UTC
+* Number of recursive dependencies: 117
+
+Run `cloud_details(, "oHMMed")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/oHMMed/new/oHMMed.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘oHMMed/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘oHMMed’ version ‘1.0.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘cvms’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/oHMMed/old/oHMMed.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘oHMMed/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘oHMMed’ version ‘1.0.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘cvms’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# OlinkAnalyze
+
+
+
+* Version: 3.5.1
+* GitHub: NA
+* Source code: https://github.com/cran/OlinkAnalyze
+* Date/Publication: 2023-08-08 21:00:02 UTC
+* Number of recursive dependencies: 212
+
+Run `cloud_details(, "OlinkAnalyze")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/OlinkAnalyze/new/OlinkAnalyze.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘OlinkAnalyze’ version ‘3.5.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+...
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘OutlierExclusion.Rmd’ using ‘UTF-8’... OK
+ ‘Vignett.Rmd’ using ‘UTF-8’... OK
+ ‘bridging_introduction.Rmd’ using ‘UTF-8’... OK
+ ‘plate_randomizer.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/OlinkAnalyze/old/OlinkAnalyze.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘OlinkAnalyze’ version ‘3.5.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+...
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘OutlierExclusion.Rmd’ using ‘UTF-8’... OK
+ ‘Vignett.Rmd’ using ‘UTF-8’... OK
+ ‘bridging_introduction.Rmd’ using ‘UTF-8’... OK
+ ‘plate_randomizer.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+# OpenMx
+
+
+
+* Version: 2.21.8
+* GitHub: https://github.com/OpenMx/OpenMx
+* Source code: https://github.com/cran/OpenMx
+* Date/Publication: 2023-04-05 20:43:20 UTC
+* Number of recursive dependencies: 147
+
+Run `cloud_details(, "OpenMx")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/OpenMx/new/OpenMx.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘OpenMx/DESCRIPTION’ ... OK
+* this is package ‘OpenMx’ version ‘2.21.8’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... NOTE
+...
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘deriv.Rmd’ using ‘UTF-8’... OK
+ ‘reg_mimic.Rmd’ using ‘UTF-8’... OK
+ ‘factor_analysis.Rmd’ using ‘UTF-8’... OK
+ ‘regularization.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 4 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/OpenMx/old/OpenMx.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘OpenMx/DESCRIPTION’ ... OK
+* this is package ‘OpenMx’ version ‘2.21.8’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... NOTE
+...
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘deriv.Rmd’ using ‘UTF-8’... OK
+ ‘reg_mimic.Rmd’ using ‘UTF-8’... OK
+ ‘factor_analysis.Rmd’ using ‘UTF-8’... OK
+ ‘regularization.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 4 NOTEs
+
+
+
+
+
+```
+# phylosem
+
+
+
+* Version: 1.1.0
+* GitHub: NA
+* Source code: https://github.com/cran/phylosem
+* Date/Publication: 2023-10-06 20:30:02 UTC
+* Number of recursive dependencies: 206
+
+Run `cloud_details(, "phylosem")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/phylosem/new/phylosem.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘phylosem/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘phylosem’ version ‘1.1.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘phylopath’
+
+Package which this enhances but not available for checking: ‘DiagrammeR’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/phylosem/old/phylosem.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘phylosem/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘phylosem’ version ‘1.1.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘phylopath’
+
+Package which this enhances but not available for checking: ‘DiagrammeR’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# PsychWordVec
+
+
+
+* Version: 2023.9
+* GitHub: https://github.com/psychbruce/PsychWordVec
+* Source code: https://github.com/cran/PsychWordVec
+* Date/Publication: 2023-09-27 14:20:02 UTC
+* Number of recursive dependencies: 234
+
+Run `cloud_details(, "PsychWordVec")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/PsychWordVec/new/PsychWordVec.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘PsychWordVec/DESCRIPTION’ ... OK
+* this is package ‘PsychWordVec’ version ‘2023.9’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘bruceR’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/PsychWordVec/old/PsychWordVec.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘PsychWordVec/DESCRIPTION’ ... OK
+* this is package ‘PsychWordVec’ version ‘2023.9’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘bruceR’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# RcppCensSpatial
+
+
+
+* Version: 0.3.0
+* GitHub: NA
+* Source code: https://github.com/cran/RcppCensSpatial
+* Date/Publication: 2022-06-27 23:00:02 UTC
+* Number of recursive dependencies: 64
+
+Run `cloud_details(, "RcppCensSpatial")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/RcppCensSpatial/new/RcppCensSpatial.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘RcppCensSpatial/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘RcppCensSpatial’ version ‘0.3.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MomTrunc’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/RcppCensSpatial/old/RcppCensSpatial.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘RcppCensSpatial/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘RcppCensSpatial’ version ‘0.3.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘MomTrunc’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# rmsb
+
+
+
+* Version: 1.0-0
+* GitHub: NA
+* Source code: https://github.com/cran/rmsb
+* Date/Publication: 2023-09-26 13:10:02 UTC
+* Number of recursive dependencies: 144
+
+Run `cloud_details(, "rmsb")` for more info
+
+
+
+## In both
+
+* checking whether package ‘rmsb’ can be installed ... ERROR
+ ```
+ Installation failed.
+ See ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/00install.out’ for details.
+ ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘rmsb’ ...
+** package ‘rmsb’ successfully unpacked and MD5 sums checked
+** using staged installation
+Error in loadNamespace(x) : there is no package called ‘rstantools’
+Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
+Execution halted
+ERROR: configuration failed for package ‘rmsb’
+* removing ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/rmsb’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘rmsb’ ...
+** package ‘rmsb’ successfully unpacked and MD5 sums checked
+** using staged installation
+Error in loadNamespace(x) : there is no package called ‘rstantools’
+Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
+Execution halted
+ERROR: configuration failed for package ‘rmsb’
+* removing ‘/tmp/workdir/rmsb/old/rmsb.Rcheck/rmsb’
+
+
+```
+# rstanarm
+
+
+
+* Version: 2.26.1
+* GitHub: https://github.com/stan-dev/rstanarm
+* Source code: https://github.com/cran/rstanarm
+* Date/Publication: 2023-09-13 22:50:03 UTC
+* Number of recursive dependencies: 138
+
+Run `cloud_details(, "rstanarm")` for more info
+
+
+
+## In both
+
+* checking whether package ‘rstanarm’ can be installed ... ERROR
+ ```
+ Installation failed.
+ See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details.
+ ```
+
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘rstanarm’ ...
+** package ‘rstanarm’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+"/opt/R/4.1.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/lm.stan
+Wrote C++ file "stan_files/lm.cc"
+
+
+g++ -std=gnu++17 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.1.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.1.1/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.1.1/lib/R/site-library/rstan/include' -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -I'/opt/R/4.1.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c stan_files/lm.cc -o stan_files/lm.o
+In file included from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
+...
+stan_files/mvmer.hpp: In constructor ‘model_mvmer_namespace::model_mvmer::model_mvmer(stan::io::var_context&, unsigned int, std::ostream*)’:
+stan_files/mvmer.hpp:5105:3: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
+ 5105 | model_mvmer(stan::io::var_context& context__,
+ | ^~~~~~~~~~~
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stan_files/mvmer.o] Error 1
+rm stan_files/lm.cc stan_files/mvmer.cc
+ERROR: compilation failed for package ‘rstanarm’
+* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’
+
+
+```
+### CRAN
+
+```
+* installing *source* package ‘rstanarm’ ...
+** package ‘rstanarm’ successfully unpacked and MD5 sums checked
+** using staged installation
+** libs
+"/opt/R/4.1.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/lm.stan
+Wrote C++ file "stan_files/lm.cc"
+
+
+g++ -std=gnu++17 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.1.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.1.1/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.1.1/lib/R/site-library/rstan/include' -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -I'/opt/R/4.1.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c stan_files/lm.cc -o stan_files/lm.o
+In file included from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
+...
+stan_files/mvmer.hpp: In constructor ‘model_mvmer_namespace::model_mvmer::model_mvmer(stan::io::var_context&, unsigned int, std::ostream*)’:
+stan_files/mvmer.hpp:5105:3: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
+ 5105 | model_mvmer(stan::io::var_context& context__,
+ | ^~~~~~~~~~~
+g++: fatal error: Killed signal terminated program cc1plus
+compilation terminated.
+make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stan_files/mvmer.o] Error 1
+rm stan_files/lm.cc stan_files/mvmer.cc
+ERROR: compilation failed for package ‘rstanarm’
+* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# RVA
+
+
+
+* Version: 0.0.5
+* GitHub: https://github.com/THERMOSTATS/RVA
+* Source code: https://github.com/cran/RVA
+* Date/Publication: 2021-11-01 21:40:02 UTC
+* Number of recursive dependencies: 210
+
+Run `cloud_details(, "RVA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘PsychWordVec/DESCRIPTION’ ... OK
-* this is package ‘PsychWordVec’ version ‘0.3.2’
+* checking for file ‘RVA/DESCRIPTION’ ... OK
+* this is package ‘RVA’ version ‘0.0.5’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘clusterProfiler’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘RVA/DESCRIPTION’ ... OK
+* this is package ‘RVA’ version ‘0.0.5’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘clusterProfiler’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# SCpubr
+
+
+
+* Version: 2.0.1
+* GitHub: https://github.com/enblacar/SCpubr
+* Source code: https://github.com/cran/SCpubr
+* Date/Publication: 2023-08-13 12:40:15 UTC
+* Number of recursive dependencies: 295
+
+Run `cloud_details(, "SCpubr")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘SCpubr/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘SCpubr’ version ‘2.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘bruceR’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
+...
+ [ FAIL 10 | WARN 0 | SKIP 381 | PASS 72 ]
+ Error: Test failures
+ Execution halted
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘reference_manual.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
* DONE
-Status: 1 ERROR
+Status: 1 ERROR, 1 WARNING, 2 NOTEs
@@ -2147,22 +3768,27 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/PsychWordVec/old/PsychWordVec.Rcheck’
+* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘PsychWordVec/DESCRIPTION’ ... OK
-* this is package ‘PsychWordVec’ version ‘0.3.2’
+* checking for file ‘SCpubr/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘SCpubr’ version ‘2.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘bruceR’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
+...
+ [ FAIL 10 | WARN 0 | SKIP 381 | PASS 72 ]
+ Error: Test failures
+ Execution halted
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘reference_manual.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
* DONE
-Status: 1 ERROR
+Status: 1 ERROR, 1 WARNING, 2 NOTEs
@@ -2239,16 +3865,17 @@ Run `cloud_details(, "NA")` for more info
```
-# NA
+# SSVS
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
+* Version: 2.0.0
+* GitHub: https://github.com/sabainter/SSVS
+* Source code: https://github.com/cran/SSVS
+* Date/Publication: 2022-05-29 05:40:09 UTC
+* Number of recursive dependencies: 124
-Run `cloud_details(, "NA")` for more info
+Run `cloud_details(, "SSVS")` for more info
@@ -2257,7 +3884,22 @@ Run `cloud_details(, "NA")` for more info
### Devel
```
+* using log directory ‘/tmp/workdir/SSVS/new/SSVS.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘SSVS/DESCRIPTION’ ... OK
+* this is package ‘SSVS’ version ‘2.0.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘BoomSpikeSlab’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
@@ -2267,24 +3909,39 @@ Run `cloud_details(, "NA")` for more info
### CRAN
```
+* using log directory ‘/tmp/workdir/SSVS/old/SSVS.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘SSVS/DESCRIPTION’ ... OK
+* this is package ‘SSVS’ version ‘2.0.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘BoomSpikeSlab’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
```
-# RcppCensSpatial
+# streamDAG
-* Version: 0.3.0
+* Version: 1.5
* GitHub: NA
-* Source code: https://github.com/cran/RcppCensSpatial
-* Date/Publication: 2022-06-27 23:00:02 UTC
-* Number of recursive dependencies: 64
+* Source code: https://github.com/cran/streamDAG
+* Date/Publication: 2023-10-06 18:50:02 UTC
+* Number of recursive dependencies: 133
-Run `cloud_details(, "RcppCensSpatial")` for more info
+Run `cloud_details(, "streamDAG")` for more info
@@ -2293,18 +3950,16 @@ Run `cloud_details(, "RcppCensSpatial")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/RcppCensSpatial/new/RcppCensSpatial.Rcheck’
+* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘RcppCensSpatial/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘RcppCensSpatial’ version ‘0.3.0’
-* package encoding: UTF-8
+* checking for file ‘streamDAG/DESCRIPTION’ ... OK
+* this is package ‘streamDAG’ version ‘1.5’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Package required but not available: ‘MomTrunc’
+Package required but not available: ‘asbio’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -2319,18 +3974,16 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/RcppCensSpatial/old/RcppCensSpatial.Rcheck’
+* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘RcppCensSpatial/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘RcppCensSpatial’ version ‘0.3.0’
-* package encoding: UTF-8
+* checking for file ‘streamDAG/DESCRIPTION’ ... OK
+* this is package ‘streamDAG’ version ‘1.5’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Package required but not available: ‘MomTrunc’
+Package required but not available: ‘asbio’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -2342,16 +3995,17 @@ Status: 1 ERROR
```
-# NA
+# TestAnaAPP
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
+* Version: 0.1.2
+* GitHub: https://github.com/jiangyouxiang/TestAnaAPP
+* Source code: https://github.com/cran/TestAnaAPP
+* Date/Publication: 2023-09-11 08:40:05 UTC
+* Number of recursive dependencies: 240
-Run `cloud_details(, "NA")` for more info
+Run `cloud_details(, "TestAnaAPP")` for more info
@@ -2360,7 +4014,22 @@ Run `cloud_details(, "NA")` for more info
### Devel
```
+* using log directory ‘/tmp/workdir/TestAnaAPP/new/TestAnaAPP.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘TestAnaAPP/DESCRIPTION’ ... OK
+* this is package ‘TestAnaAPP’ version ‘0.1.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘bruceR’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
@@ -2370,23 +4039,39 @@ Run `cloud_details(, "NA")` for more info
### CRAN
```
+* using log directory ‘/tmp/workdir/TestAnaAPP/old/TestAnaAPP.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘TestAnaAPP/DESCRIPTION’ ... OK
+* this is package ‘TestAnaAPP’ version ‘0.1.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘bruceR’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
```
-# NA
+# tidySEM
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
+* Version: 0.2.4
+* GitHub: https://github.com/cjvanlissa/tidySEM
+* Source code: https://github.com/cran/tidySEM
+* Date/Publication: 2023-05-01 20:00:06 UTC
+* Number of recursive dependencies: 191
-Run `cloud_details(, "NA")` for more info
+Run `cloud_details(, "tidySEM")` for more info
@@ -2395,7 +4080,27 @@ Run `cloud_details(, "NA")` for more info
### Devel
```
-
+* using log directory ‘/tmp/workdir/tidySEM/new/tidySEM.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidySEM/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘tidySEM’ version ‘0.2.4’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+...
+ ‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK
+ ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK
+ ‘lca_confirmatory.Rmd’ using ‘UTF-8’... OK
+ ‘lca_exploratory.Rmd’ using ‘UTF-8’... OK
+ ‘lca_lcga.Rmd’ using ‘UTF-8’... OK
+ ‘lca_ordinal.Rmd’ using ‘UTF-8’... OK
+ ‘sem_graph.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
@@ -2405,7 +4110,27 @@ Run `cloud_details(, "NA")` for more info
### CRAN
```
-
+* using log directory ‘/tmp/workdir/tidySEM/old/tidySEM.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidySEM/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘tidySEM’ version ‘0.2.4’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+...
+ ‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK
+ ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK
+ ‘lca_confirmatory.Rmd’ using ‘UTF-8’... OK
+ ‘lca_exploratory.Rmd’ using ‘UTF-8’... OK
+ ‘lca_lcga.Rmd’ using ‘UTF-8’... OK
+ ‘lca_ordinal.Rmd’ using ‘UTF-8’... OK
+ ‘sem_graph.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
@@ -2447,95 +4172,17 @@ Run `cloud_details(, "NA")` for more info
```
-# rstan
-
-
-
-* Version: 2.21.8
-* GitHub: https://github.com/stan-dev/rstan
-* Source code: https://github.com/cran/rstan
-* Date/Publication: 2023-01-17 12:40:02 UTC
-* Number of recursive dependencies: 112
-
-Run `cloud_details(, "rstan")` for more info
-
-
-
-## In both
-
-* checking whether package ‘rstan’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/rstan/new/rstan.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘rstan’ ...
-** package ‘rstan’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I'/opt/R/4.1.1/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c chains.cpp -o chains.o
-In file included from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
- from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.1.1/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
- from /opt/R/4.1.1/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/meta/append_return_type.hpp:4,
- from /opt/R/4.1.1/lib/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:9,
-...
- 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
- | ^~~~~~~
-/opt/R/4.1.1/lib/R/site-library/BH/include/boost/spirit/include/phoenix_core.hpp:12:1: note: in expansion of macro ‘BOOST_HEADER_DEPRECATED’
- 12 | BOOST_HEADER_DEPRECATED("")
- | ^~~~~~~~~~~~~~~~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:177: grammar_inst.o] Error 1
-ERROR: compilation failed for package ‘rstan’
-* removing ‘/tmp/workdir/rstan/new/rstan.Rcheck/rstan’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘rstan’ ...
-** package ‘rstan’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -DSTAN_THREADS -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I'/opt/R/4.1.1/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c chains.cpp -o chains.o
-In file included from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
- from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.1.1/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
- from /opt/R/4.1.1/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/meta/append_return_type.hpp:4,
- from /opt/R/4.1.1/lib/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:9,
-...
- 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
- | ^~~~~~~
-/opt/R/4.1.1/lib/R/site-library/BH/include/boost/spirit/include/phoenix_core.hpp:12:1: note: in expansion of macro ‘BOOST_HEADER_DEPRECATED’
- 12 | BOOST_HEADER_DEPRECATED("")
- | ^~~~~~~~~~~~~~~~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:177: grammar_inst.o] Error 1
-ERROR: compilation failed for package ‘rstan’
-* removing ‘/tmp/workdir/rstan/old/rstan.Rcheck/rstan’
-
-
-```
-# RVA
+# tinyarray
-* Version: 0.0.5
-* GitHub: https://github.com/THERMOSTATS/RVA
-* Source code: https://github.com/cran/RVA
-* Date/Publication: 2021-11-01 21:40:02 UTC
-* Number of recursive dependencies: 209
+* Version: 2.3.1
+* GitHub: https://github.com/xjsun1221/tinyarray
+* Source code: https://github.com/cran/tinyarray
+* Date/Publication: 2023-08-18 08:20:02 UTC
+* Number of recursive dependencies: 233
-Run `cloud_details(, "RVA")` for more info
+Run `cloud_details(, "tinyarray")` for more info
@@ -2544,13 +4191,14 @@ Run `cloud_details(, "RVA")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’
+* using log directory ‘/tmp/workdir/tinyarray/new/tinyarray.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘RVA/DESCRIPTION’ ... OK
-* this is package ‘RVA’ version ‘0.0.5’
+* checking for file ‘tinyarray/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘tinyarray’ version ‘2.3.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
@@ -2569,121 +4217,40 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’
+* using log directory ‘/tmp/workdir/tinyarray/old/tinyarray.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘RVA/DESCRIPTION’ ... OK
-* this is package ‘RVA’ version ‘0.0.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# rxode2
-
-
-
-* Version: 2.0.11
-* GitHub: https://github.com/nlmixr2/rxode2
-* Source code: https://github.com/cran/rxode2
-* Date/Publication: 2022-11-01 21:45:04 UTC
-* Number of recursive dependencies: 191
-
-Run `cloud_details(, "rxode2")` for more info
-
-
-
-## In both
-
-* checking whether package ‘rxode2’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/rxode2/new/rxode2.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘symengine’
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘rxode2’ ...
-** package ‘rxode2’ successfully unpacked and MD5 sums checked
-** using staged installation
-
-R version 4.1.1 (2021-08-10) -- "Kick Things"
-Copyright (C) 2021 The R Foundation for Statistical Computing
-Platform: x86_64-pc-linux-gnu (64-bit)
-
-R is free software and comes with ABSOLUTELY NO WARRANTY.
-You are welcome to redistribute it under certain conditions.
-...
-gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/rxode2parse/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2random/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2et/include' -I'/opt/R/4.1.1/lib/R/site-library/PreciseSums/include' -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -c dscal.c -o dscal.o
-gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsphiv.f -o dsphiv.o
-g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/rxode2parse/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2random/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2et/include' -I'/opt/R/4.1.1/lib/R/site-library/PreciseSums/include' -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/opt/R/4.1.1/lib/R/site-library/BH/include" -fpic -g -O2 -c etTran.cpp -o etTran.o
-etTran.cpp:333:10: fatal error: rxode2etConvertMethod.h: No such file or directory
- 333 | #include
- | ^~~~~~~~~~~~~~~~~~~~~~~~~
-compilation terminated.
-make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:177: etTran.o] Error 1
-ERROR: compilation failed for package ‘rxode2’
-* removing ‘/tmp/workdir/rxode2/new/rxode2.Rcheck/rxode2’
-
+* checking for file ‘tinyarray/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘tinyarray’ version ‘2.3.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘clusterProfiler’
-```
-### CRAN
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-```
-* installing *source* package ‘rxode2’ ...
-** package ‘rxode2’ successfully unpacked and MD5 sums checked
-** using staged installation
-R version 4.1.1 (2021-08-10) -- "Kick Things"
-Copyright (C) 2021 The R Foundation for Statistical Computing
-Platform: x86_64-pc-linux-gnu (64-bit)
-R is free software and comes with ABSOLUTELY NO WARRANTY.
-You are welcome to redistribute it under certain conditions.
-...
-gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/rxode2parse/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2random/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2et/include' -I'/opt/R/4.1.1/lib/R/site-library/PreciseSums/include' -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I/usr/local/include -D_isrxode2_ -fpic -g -O2 -c dscal.c -o dscal.o
-gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dsphiv.f -o dsphiv.o
-g++ -std=gnu++14 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/rxode2parse/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2random/include' -I'/opt/R/4.1.1/lib/R/site-library/rxode2et/include' -I'/opt/R/4.1.1/lib/R/site-library/PreciseSums/include' -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/BH/include' -I/usr/local/include -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/opt/R/4.1.1/lib/R/site-library/BH/include" -fpic -g -O2 -c etTran.cpp -o etTran.o
-etTran.cpp:333:10: fatal error: rxode2etConvertMethod.h: No such file or directory
- 333 | #include
- | ^~~~~~~~~~~~~~~~~~~~~~~~~
-compilation terminated.
-make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:177: etTran.o] Error 1
-ERROR: compilation failed for package ‘rxode2’
-* removing ‘/tmp/workdir/rxode2/old/rxode2.Rcheck/rxode2’
```
-# NA
+# TOmicsVis
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/NA
-* Number of recursive dependencies: 0
+* Version: 2.0.0
+* GitHub: https://github.com/benben-miao/TOmicsVis
+* Source code: https://github.com/cran/TOmicsVis
+* Date/Publication: 2023-08-28 18:30:02 UTC
+* Number of recursive dependencies: 258
-Run `cloud_details(, "NA")` for more info
+Run `cloud_details(, "TOmicsVis")` for more info
@@ -2692,7 +4259,23 @@ Run `cloud_details(, "NA")` for more info
### Devel
```
+* using log directory ‘/tmp/workdir/TOmicsVis/new/TOmicsVis.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘TOmicsVis/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘TOmicsVis’ version ‘2.0.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'clusterProfiler', 'enrichplot'
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
@@ -2702,24 +4285,39 @@ Run `cloud_details(, "NA")` for more info
### CRAN
```
+* using log directory ‘/tmp/workdir/TOmicsVis/old/TOmicsVis.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘TOmicsVis/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘TOmicsVis’ version ‘2.0.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'clusterProfiler', 'enrichplot'
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
```
-# SCpubr
+# NA
-* Version: 1.1.2
-* GitHub: https://github.com/enblacar/SCpubr
-* Source code: https://github.com/cran/SCpubr
-* Date/Publication: 2023-01-18 12:20:02 UTC
-* Number of recursive dependencies: 290
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "SCpubr")` for more info
+Run `cloud_details(, "NA")` for more info
@@ -2728,27 +4326,7 @@ Run `cloud_details(, "SCpubr")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘SCpubr/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘SCpubr’ version ‘1.1.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
- Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘reference_manual.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 WARNING, 2 NOTEs
+
@@ -2758,44 +4336,23 @@ Status: 1 WARNING, 2 NOTEs
### CRAN
```
-* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘SCpubr/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘SCpubr’ version ‘1.1.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-* checking for unstated dependencies in ‘tests’ ... OK
-* checking tests ... OK
- Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘reference_manual.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 WARNING, 2 NOTEs
+
```
-# tidySEM
+# NA
-* Version: 0.2.3
-* GitHub: https://github.com/cjvanlissa/tidySEM
-* Source code: https://github.com/cran/tidySEM
-* Date/Publication: 2022-04-14 17:50:02 UTC
-* Number of recursive dependencies: 173
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "tidySEM")` for more info
+Run `cloud_details(, "NA")` for more info
@@ -2804,27 +4361,7 @@ Run `cloud_details(, "tidySEM")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/tidySEM/new/tidySEM.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘tidySEM/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘tidySEM’ version ‘0.2.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘Generating_syntax.Rmd’ using ‘UTF-8’... OK
- ‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK
- ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK
- ‘sem_graph.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
+
@@ -2834,27 +4371,7 @@ Status: 1 NOTE
### CRAN
```
-* using log directory ‘/tmp/workdir/tidySEM/old/tidySEM.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘tidySEM/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘tidySEM’ version ‘0.2.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-...
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... NONE
- ‘Generating_syntax.Rmd’ using ‘UTF-8’... OK
- ‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK
- ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK
- ‘sem_graph.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
+
@@ -2896,17 +4413,16 @@ Run `cloud_details(, "NA")` for more info
```
-# tinyarray
+# NA
-* Version: 2.2.9
-* GitHub: https://github.com/xjsun1221/tinyarray
-* Source code: https://github.com/cran/tinyarray
-* Date/Publication: 2023-03-04 07:40:02 UTC
-* Number of recursive dependencies: 229
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "tinyarray")` for more info
+Run `cloud_details(, "NA")` for more info
@@ -2915,23 +4431,7 @@ Run `cloud_details(, "tinyarray")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/tinyarray/new/tinyarray.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘tinyarray/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘tinyarray’ version ‘2.2.9’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
@@ -2941,23 +4441,7 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/tinyarray/old/tinyarray.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘tinyarray/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘tinyarray’ version ‘2.2.9’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘clusterProfiler’
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
@@ -2972,7 +4456,7 @@ Status: 1 ERROR
* GitHub: NA
* Source code: https://github.com/cran/valse
* Date/Publication: 2021-05-31 08:00:02 UTC
-* Number of recursive dependencies: 51
+* Number of recursive dependencies: 56
Run `cloud_details(, "valse")` for more info
@@ -3116,11 +4600,11 @@ Run `cloud_details(, "NA")` for more info
-* Version: 0.2.5
+* Version: 0.2.8
* GitHub: NA
* Source code: https://github.com/cran/vivid
-* Date/Publication: 2023-02-13 16:40:02 UTC
-* Number of recursive dependencies: 206
+* Date/Publication: 2023-07-10 22:20:02 UTC
+* Number of recursive dependencies: 212
Run `cloud_details(, "vivid")` for more info
@@ -3137,18 +4621,18 @@ Run `cloud_details(, "vivid")` for more info
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘vivid/DESCRIPTION’ ... OK
-* this is package ‘vivid’ version ‘0.2.5’
+* this is package ‘vivid’ version ‘0.2.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
-* checking tests ... OK
- Running ‘testthat.R’
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
- ‘vivid.Rmd’ using ‘UTF-8’... OK
- ‘vividQStart.Rmd’ using ‘UTF-8’... OK
+ ‘vividVignette.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE
@@ -3167,18 +4651,18 @@ Status: 1 NOTE
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘vivid/DESCRIPTION’ ... OK
-* this is package ‘vivid’ version ‘0.2.5’
+* this is package ‘vivid’ version ‘0.2.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
-* checking tests ... OK
- Running ‘testthat.R’
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
- ‘vivid.Rmd’ using ‘UTF-8’... OK
- ‘vividQStart.Rmd’ using ‘UTF-8’... OK
+ ‘vividVignette.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE
@@ -3257,6 +4741,78 @@ Run `cloud_details(, "NA")` for more info
+```
+# xpose.nlmixr2
+
+
+
+* Version: 0.4.0
+* GitHub: NA
+* Source code: https://github.com/cran/xpose.nlmixr2
+* Date/Publication: 2022-06-08 09:10:02 UTC
+* Number of recursive dependencies: 156
+
+Run `cloud_details(, "xpose.nlmixr2")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/xpose.nlmixr2/new/xpose.nlmixr2.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘xpose.nlmixr2/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘xpose.nlmixr2’ version ‘0.4.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘nlmixr2est’
+
+Package suggested but not available for checking: ‘nlmixr2’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/xpose.nlmixr2/old/xpose.nlmixr2.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘xpose.nlmixr2/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘xpose.nlmixr2’ version ‘0.4.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘nlmixr2est’
+
+Package suggested but not available for checking: ‘nlmixr2’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
```
# NA
diff --git a/revdep/problems.md b/revdep/problems.md
index 97198cc243..70d42f0dd7 100644
--- a/revdep/problems.md
+++ b/revdep/problems.md
@@ -1,14 +1,14 @@
-# afex
+# jfa
-* Version: 1.2-1
-* GitHub: https://github.com/singmann/afex
-* Source code: https://github.com/cran/afex
-* Date/Publication: 2023-01-09 08:40:11 UTC
-* Number of recursive dependencies: 224
+* Version: 0.7.0
+* GitHub: https://github.com/koenderks/jfa
+* Source code: https://github.com/cran/jfa
+* Date/Publication: 2023-10-04 14:50:02 UTC
+* Number of recursive dependencies: 187
-Run `cloud_details(, "afex")` for more info
+Run `cloud_details(, "jfa")` for more info
@@ -17,143 +17,23 @@ Run `cloud_details(, "afex")` for more info
* checking re-building of vignette outputs ... WARNING
```
Error(s) in re-building vignettes:
- --- re-building ‘afex_analysing_accuracy_data.Rmd’ using rmarkdown
- Quitting from lines 326-331 (afex_analysing_accuracy_data.Rmd)
- Error: processing vignette 'afex_analysing_accuracy_data.Rmd' failed with diagnostics:
- Problem while computing position.
- ℹ Error occurred in the 1st layer.
- Caused by error in `ggplot2::remove_missing()`:
- ! `na.rm` must be `TRUE` or `FALSE`, not an empty logical vector.
- --- failed re-building ‘afex_analysing_accuracy_data.Rmd’
+ --- re-building ‘algorithm-auditing.Rmd’ using rmarkdown
+ --- finished re-building ‘algorithm-auditing.Rmd’
- ...
- --- finished re-building ‘assumptions_of_ANOVAs.Rmd’
-
- --- re-building ‘introduction-mixed-models.pdf.asis’ using asis
- --- finished re-building ‘introduction-mixed-models.pdf.asis’
+ --- re-building ‘audit-sampling.Rmd’ using rmarkdown
+ --- finished re-building ‘audit-sampling.Rmd’
- SUMMARY: processing the following file failed:
- ‘afex_analysing_accuracy_data.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-# dalmatian
-
-
-
-* Version: 1.0.0
-* GitHub: NA
-* Source code: https://github.com/cran/dalmatian
-* Date/Publication: 2021-11-22 19:40:02 UTC
-* Number of recursive dependencies: 92
-
-Run `cloud_details(, "dalmatian")` for more info
-
-
-
-## Newly broken
-
-* checking re-building of vignette outputs ... WARNING
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘beta-binomial-1.Rmd’ using rmarkdown
- Quitting from lines 142-147 (beta-binomial-1.Rmd)
- Error: processing vignette 'beta-binomial-1.Rmd' failed with diagnostics:
- could not find function "discrete_range"
- --- failed re-building ‘beta-binomial-1.Rmd’
+ --- re-building ‘bayesian-sampling-workflow.Rmd’ using rmarkdown
+ --- finished re-building ‘bayesian-sampling-workflow.Rmd’
- --- re-building ‘gamma-1.Rmd’ using rmarkdown
- Quitting from lines 144-149 (gamma-1.Rmd)
- Error: processing vignette 'gamma-1.Rmd' failed with diagnostics:
...
- --- re-building ‘weights-1-simulate.Rmd’ using rmarkdown
- --- finished re-building ‘weights-1-simulate.Rmd’
-
- SUMMARY: processing the following files failed:
- ‘beta-binomial-1.Rmd’ ‘gamma-1.Rmd’ ‘negative-binomial-1.Rmd’
- ‘pied-flycatchers-1.Rmd’ ‘pied-flycatchers-2.Rmd’
- ‘pied-flycatchers-3.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-# DriveML
-
-
-
-* Version: 0.1.5
-* GitHub: https://github.com/daya6489/DriveML
-* Source code: https://github.com/cran/DriveML
-* Date/Publication: 2022-12-02 11:20:02 UTC
-* Number of recursive dependencies: 119
-
-Run `cloud_details(, "DriveML")` for more info
-
-
-
-## Newly broken
-
-* checking re-building of vignette outputs ... WARNING
- ```
- Error(s) in re-building vignettes:
- ...
- --- re-building ‘DriveML.Rmd’ using rmarkdown
- Quitting from lines 341-343 (DriveML.Rmd)
- Error: processing vignette 'DriveML.Rmd' failed with diagnostics:
- could not find function "discrete_range"
- --- failed re-building ‘DriveML.Rmd’
+ --- finished re-building ‘sample-selection.Rmd’
- SUMMARY: processing the following file failed:
- ‘DriveML.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 8 marked UTF-8 strings
- ```
-
-# EcoEnsemble
-
-
-
-* Version: 1.0.2
-* GitHub: NA
-* Source code: https://github.com/cran/EcoEnsemble
-* Date/Publication: 2023-03-17 15:00:05 UTC
-* Number of recursive dependencies: 87
-
-Run `cloud_details(, "EcoEnsemble")` for more info
-
-
-
-## Newly broken
-
-* checking re-building of vignette outputs ... WARNING
- ```
- Error(s) in re-building vignettes:
- ...
- --- re-building ‘EcoEnsemble.Rmd’ using rmarkdown
- Quitting from lines 722-723 (EcoEnsemble.Rmd)
- Error: processing vignette 'EcoEnsemble.Rmd' failed with diagnostics:
- could not find function "discrete_range"
- --- failed re-building ‘EcoEnsemble.Rmd’
-
- --- re-building ‘ExploringPriors.Rmd’ using rmarkdown
- --- finished re-building ‘ExploringPriors.Rmd’
-
- --- re-building ‘SyntheticData.Rmd’ using rmarkdown
- --- finished re-building ‘SyntheticData.Rmd’
+ --- re-building ‘sampling-workflow.Rmd’ using rmarkdown
+ --- finished re-building ‘sampling-workflow.Rmd’
SUMMARY: processing the following file failed:
- ‘EcoEnsemble.Rmd’
+ ‘data-auditing.Rmd’
Error: Vignette re-building failed.
Execution halted
@@ -163,9 +43,10 @@ Run `cloud_details(, "EcoEnsemble")` for more info
* checking installed package size ... NOTE
```
- installed size is 195.8Mb
+ installed size is 120.4Mb
sub-directories of 1Mb or more:
- libs 194.8Mb
+ doc 3.2Mb
+ libs 115.7Mb
```
* checking dependencies in R code ... NOTE
@@ -180,191 +61,17 @@ Run `cloud_details(, "EcoEnsemble")` for more info
GNU make is a SystemRequirements.
```
-# ggh4x
-
-
-
-* Version: 0.2.3
-* GitHub: https://github.com/teunbrand/ggh4x
-* Source code: https://github.com/cran/ggh4x
-* Date/Publication: 2022-11-09 08:40:24 UTC
-* Number of recursive dependencies: 79
-
-Run `cloud_details(, "ggh4x")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘ggh4x’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ggh4x/new/ggh4x.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘ggh4x’ ...
-** package ‘ggh4x’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in get(x, envir = ns, inherits = FALSE) :
- object 'continuous_range' not found
-Error: unable to load R code in package ‘ggh4x’
-Execution halted
-ERROR: lazy loading failed for package ‘ggh4x’
-* removing ‘/tmp/workdir/ggh4x/new/ggh4x.Rcheck/ggh4x’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘ggh4x’ ...
-** package ‘ggh4x’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-*** copying figures
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (ggh4x)
-
-
-```
-# ggtern
-
-
-
-* Version: 3.4.1
-* GitHub: NA
-* Source code: https://github.com/cran/ggtern
-* Date/Publication: 2022-12-06 03:10:02 UTC
-* Number of recursive dependencies: 42
-
-Run `cloud_details(, "ggtern")` for more info
-
-
-
-## Newly broken
-
-* checking Rd files ... WARNING
- ```
- prepare_Rd: the condition has length > 1 and only the first element will be used
- ```
-
-## In both
-
-* checking package dependencies ... NOTE
- ```
- Package which this enhances but not available for checking: ‘sp’
- ```
-
-* checking Rd cross-references ... NOTE
- ```
- Package unavailable to check Rd xrefs: ‘chemometrics’
- ```
-
-# siland
-
-
-
-* Version: 2.0.5
-* GitHub: NA
-* Source code: https://github.com/cran/siland
-* Date/Publication: 2021-01-27 20:10:03 UTC
-* Number of recursive dependencies: 108
-
-Run `cloud_details(, "siland")` for more info
-
-
-
-## Newly broken
-
-* checking re-building of vignette outputs ... WARNING
- ```
- Error(s) in re-building vignettes:
- ...
- --- re-building ‘siland.Rmd’ using rmarkdown
- Quitting from lines 155-156 (siland.Rmd)
- Error: processing vignette 'siland.Rmd' failed with diagnostics:
- could not find function "discrete_range"
- --- failed re-building ‘siland.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘siland.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-# TCIU
-
-
-
-* Version: 1.2.2
-* GitHub: https://github.com/SOCR/TCIU
-* Source code: https://github.com/cran/TCIU
-* Date/Publication: 2023-02-27 20:02:30 UTC
-* Number of recursive dependencies: 171
-
-Run `cloud_details(, "TCIU")` for more info
-
-
-
-## Newly broken
-
-* checking re-building of vignette outputs ... WARNING
- ```
- Error(s) in re-building vignettes:
- ...
- --- re-building ‘tciu-LT-kimesurface.Rmd’ using rmarkdown
- Quitting from lines 159-160 (tciu-LT-kimesurface.Rmd)
- Error: processing vignette 'tciu-LT-kimesurface.Rmd' failed with diagnostics:
- could not find function "discrete_range"
- --- failed re-building ‘tciu-LT-kimesurface.Rmd’
-
- --- re-building ‘tciu-fMRI-analytics.Rmd’ using rmarkdown
- --- finished re-building ‘tciu-fMRI-analytics.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘tciu-LT-kimesurface.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 12.9Mb
- sub-directories of 1Mb or more:
- doc 11.8Mb
- ```
-
-# xpose
+# SCORPIUS
-* Version: 0.4.15
-* GitHub: https://github.com/UUPharmacometrics/xpose
-* Source code: https://github.com/cran/xpose
-* Date/Publication: 2023-02-25 15:30:02 UTC
-* Number of recursive dependencies: 109
+* Version: 1.0.9
+* GitHub: https://github.com/rcannood/SCORPIUS
+* Source code: https://github.com/cran/SCORPIUS
+* Date/Publication: 2023-08-07 17:30:05 UTC
+* Number of recursive dependencies: 197
-Run `cloud_details(, "xpose")` for more info
+Run `cloud_details(, "SCORPIUS")` for more info
@@ -374,20 +81,23 @@ Run `cloud_details(, "xpose")` for more info
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- ▆
- 1. ├─testthat::expect_error(...) at test-xpose_save.R:27:2
- 2. │ └─testthat:::quasi_capture(...)
- 3. │ ├─testthat (local) .capture(...)
- 4. │ │ └─base::withCallingHandlers(...)
- 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
- 6. └─xpose::xpose_save(plot = plot, file = paths_1[3])
- 7. └─ggplot2::ggsave(...)
- 8. └─ggplot2:::plot_dev(device, filename, dpi = dpi)
- 9. └─cli::cli_abort(...)
- 10. └─rlang::abort(...)
+ Complete output:
+ > library(SCORPIUS)
+ > library(dplyr)
+
+ Attaching package: 'dplyr'
+
+ The following objects are masked from 'package:stats':
+
+ ...
+ 4. │ └─base::eval(mc, parent.frame())
+ 5. └─mclust::mclustBIC(data = ``, verbose = verbose)
+ 6. ├─mclust::me(...)
+ 7. │ └─base::eval(mc, parent.frame())
+ 8. │ └─base::eval(mc, parent.frame())
+ 9. └─mclust::meEEE(...)
- [ FAIL 1 | WARN 0 | SKIP 7 | PASS 520 ]
+ [ FAIL 1 | WARN 0 | SKIP 1 | PASS 182 ]
Error: Test failures
Execution halted
```