diff --git a/revdep/README.md b/revdep/README.md index 0dc1429e..469d9cc9 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -2,91 +2,41 @@ |field |value | |:--------|:----------------------------| -|version |R version 3.5.2 (2018-12-20) | -|os |macOS Mojave 10.14.2 | +|version |R version 3.6.0 (2019-04-26) | +|os |macOS 10.15.3 | |system |x86_64, darwin15.6.0 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |America/Chicago | -|date |2019-02-16 | +|date |2020-02-28 | # Dependencies -|package |old |new |Δ | -|:---------|:-----|:----------|:--| -|forcats |0.3.0 |0.3.0.9000 |* | -|ellipsis |NA |0.0.2 |* | -|fansi |0.4.0 |0.4.0 | | -|pillar |1.3.1 |1.3.1 | | -|pkgconfig |2.0.2 |2.0.2 | | -|rlang |0.3.1 |0.3.1 | | -|tibble |2.0.1 |2.0.1 | | -|utf8 |1.1.4 |1.1.4 | | +|package |old |new |Δ | +|:----------|:------|:----------|:--| +|forcats |0.4.0 |0.4.0.9000 |* | +|assertthat |0.2.1 |0.2.1 | | +|cli |2.0.2 |2.0.2 | | +|crayon |1.3.4 |1.3.4 | | +|digest |0.6.25 |0.6.25 | | +|ellipsis |0.3.0 |0.3.0 | | +|fansi |0.4.1 |0.4.1 | | +|glue |1.3.1 |1.3.1 | | +|magrittr |1.5 |1.5 | | +|pillar |1.4.3 |1.4.3 | | +|pkgconfig |2.0.3 |2.0.3 | | +|rlang |0.4.4 |0.4.4 | | +|tibble |2.1.3 |2.1.3 | | +|utf8 |1.1.4 |1.1.4 | | +|vctrs |0.2.3 |0.2.3 | | # Revdeps -## Couldn't check (1) +## New problems (1) -|package |version |error |warning |note | -|:------------------------------------|:-------|:-----|:-------|:----| -|[circumplex](problems.md#circumplex) |0.2.1 |1 | | | - -## All (52) - -|package |version |error |warning |note | -|:----------------------------------------------|:-------|:-----|:-------|:----| -|apaTables |2.0.5 | | | | -|bench |1.0.1 | | | | -|[bupaR](problems.md#bupar) |0.4.1 | |1 | | -|[circumplex](problems.md#circumplex) |0.2.1 |1 | | | -|coalitions |0.6.5 | | | | -|[cocktailApp](problems.md#cocktailapp) |0.2.0 | | |1 | -|[dabestr](problems.md#dabestr) |0.2.0 | |1 |1 | -|descriptr |0.5.0 | | | | -|easyalluvial |0.1.8 | | | | -|evaluator |0.3.2 | | | | -|[ezplot](problems.md#ezplot) |0.2.2 | | |1 | -|[factorMerger](problems.md#factormerger) |0.3.6 | | |1 | -|[finalfit](problems.md#finalfit) |0.9.0 | | |1 | -|forwards |0.1.1 | | | | -|[furniture](problems.md#furniture) |1.8.7 | | |1 | -|genogeographer |0.1.8 | | | | -|[ggdag](problems.md#ggdag) |0.1.0 | | |1 | -|[ggridges](problems.md#ggridges) |0.5.1 | | |1 | -|[glmmfields](problems.md#glmmfields) |0.1.1 | | |1 | -|[glmSparseNet](problems.md#glmsparsenet) |1.0.0 | |1 |2 | -|glue |1.3.0 | | | | -|[haven](problems.md#haven) |2.0.0 | | |1 | -|healthcareai |2.3.0 | | | | -|[idealstan](problems.md#idealstan) |0.5.1 | | |2 | -|[iotables](problems.md#iotables) |0.4.2 | | |1 | -|[konfound](problems.md#konfound) |0.1.1 | |1 |1 | -|[MetamapsDB](problems.md#metamapsdb) |0.0.2 | | |1 | -|naniar |0.4.2 | | | | -|[noaastormevents](problems.md#noaastormevents) |0.1.0 | | |2 | -|[nzelect](problems.md#nzelect) |0.4.0 | | |2 | -|outcomerate |1.0.1 | | | | -|OutliersO3 |0.6 | | | | -|[phenopath](problems.md#phenopath) |1.6.0 | |1 | | -|[plotly](problems.md#plotly) |4.8.0 | | |2 | -|[processmapR](problems.md#processmapr) |0.3.2 | | |1 | -|[questionr](problems.md#questionr) |0.7.0 | | |2 | -|[railtrails](problems.md#railtrails) |0.1.1 | | |1 | -|[rbin](problems.md#rbin) |0.1.1 | | |1 | -|rfm |0.2.0 | | | | -|[SCnorm](problems.md#scnorm) |1.4.5 | | |1 | -|SEERaBomb |2018.1 | | | | -|simstandard |0.3.0 | | | | -|sjPlot |2.6.2 | | | | -|survivalAnalysis |0.1.1 | | | | -|[sweep](problems.md#sweep) |0.2.1.1 |1 | | | -|[TextForecast](problems.md#textforecast) |0.1.0 | | |2 | -|[tidybayes](problems.md#tidybayes) |1.0.3 |1 | | | -|[tidyLPA](problems.md#tidylpa) |0.2.4 | | |1 | -|tidytidbits |0.2.0 | | | | -|[tidyverse](problems.md#tidyverse) |1.2.1 | | |1 | -|[timetk](problems.md#timetk) |0.1.1.1 |1 | | | -|unpivotr |0.5.0 | | | | +|package |version |error |warning |note | +|:--------------------------|:-------|:------|:-------|:----| +|[haven](problems.md#haven) |2.2.0 |__+1__ | |2 | diff --git a/revdep/failures.md b/revdep/failures.md new file mode 100644 index 00000000..9a207363 --- /dev/null +++ b/revdep/failures.md @@ -0,0 +1 @@ +*Wow, no problems at all. :)* \ No newline at end of file diff --git a/revdep/problems.md b/revdep/problems.md index 88d17c48..61012c90 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,542 +1,51 @@ -# bupaR - -Version: 0.4.1 - -## In both - -* checking S3 generic/method consistency ... WARNING - ``` - sample_n: - function(tbl, size, replace, weight, .env, ...) - sample_n.eventlog: - function(tbl, size, replace, weight, .env) - - sample_n: - function(tbl, size, replace, weight, .env, ...) - sample_n.grouped_eventlog: - function(tbl, size, replace, weight, .env) - - See section ‘Generic functions and methods’ in the ‘Writing R - Extensions’ manual. - ``` - -# circumplex - -Version: 0.2.1 - -## In both - -* checking whether package ‘circumplex’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/hadley/Documents/tidyverse/forcats/revdep/checks.noindex/circumplex/new/circumplex.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘circumplex’ ... -** package ‘circumplex’ successfully unpacked and MD5 sums checked -** libs -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/hadley/Documents/tidyverse/forcats/revdep/library.noindex/circumplex/Rcpp/include" -I"/Users/hadley/Documents/tidyverse/forcats/revdep/library.noindex/circumplex/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o -clang: error: unsupported option '-fopenmp' -make: *** [RcppExports.o] Error 1 -ERROR: compilation failed for package ‘circumplex’ -* removing ‘/Users/hadley/Documents/tidyverse/forcats/revdep/checks.noindex/circumplex/new/circumplex.Rcheck/circumplex’ - -``` -### CRAN - -``` -* installing *source* package ‘circumplex’ ... -** package ‘circumplex’ successfully unpacked and MD5 sums checked -** libs -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/hadley/Documents/tidyverse/forcats/revdep/library.noindex/circumplex/Rcpp/include" -I"/Users/hadley/Documents/tidyverse/forcats/revdep/library.noindex/circumplex/RcppArmadillo/include" -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o -clang: error: unsupported option '-fopenmp' -make: *** [RcppExports.o] Error 1 -ERROR: compilation failed for package ‘circumplex’ -* removing ‘/Users/hadley/Documents/tidyverse/forcats/revdep/checks.noindex/circumplex/old/circumplex.Rcheck/circumplex’ - -``` -# cocktailApp - -Version: 0.2.0 - -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 14661 marked UTF-8 strings - ``` - -# dabestr - -Version: 0.2.0 - -## In both - -* checking re-building of vignette outputs ... WARNING - ``` - ... - - The following objects are masked from 'package:base': - - intersect, setdiff, setequal, union - - - Attaching package: 'cowplot' - - The following object is masked from 'package:ggplot2': - - ggsave - - Loading required package: boot - Warning: `data_frame()` is deprecated, use `tibble()`. - This warning is displayed once per session. - Loading required package: magrittr - Warning: Some components of ... were not used: ..1 - Quitting from lines 110-166 (robust-statistical-visualization.Rmd) - Error: processing vignette 'robust-statistical-visualization.Rmd' failed with diagnostics: - polygon edge not found - Execution halted - ``` - -* checking installed package size ... NOTE - ``` - installed size is 6.6Mb - sub-directories of 1Mb or more: - doc 5.8Mb - ``` - -# ezplot - -Version: 0.2.2 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘magrittr’ - All declared Imports should be used. - ``` - -# factorMerger - -Version: 0.3.6 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘forcats’ ‘formula.tools’ - All declared Imports should be used. - ``` - -# finalfit - -Version: 0.9.0 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘readr’ - All declared Imports should be used. - ``` - -# furniture - -Version: 1.8.7 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘magrittr’ - All declared Imports should be used. - ``` - -# ggdag - -Version: 0.1.0 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘ggforce’ ‘plyr’ - All declared Imports should be used. - ``` - -# ggridges - -Version: 0.5.1 - -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 6242 marked UTF-8 strings - ``` - -# glmmfields - -Version: 0.1.1 - -## In both - -* checking for GNU extensions in Makefiles ... NOTE - ``` - GNU make is a SystemRequirements. - ``` - -# glmSparseNet - -Version: 1.0.0 - -## In both - -* checking re-building of vignette outputs ... WARNING - ``` - Error in re-building vignettes: - ... - - Attaching package: 'dplyr' - - The following objects are masked from 'package:stats': - - filter, lag - - The following objects are masked from 'package:base': - - intersect, setdiff, setequal, union - - Quitting from lines 28-43 (example_brca_logistic.Rmd) - Error: processing vignette 'example_brca_logistic.Rmd' failed with diagnostics: - there is no package called 'curatedTCGAData' - Execution halted - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘curatedTCGAData’ - ``` - -* checking installed package size ... NOTE - ``` - installed size is 6.0Mb - sub-directories of 1Mb or more: - doc 5.2Mb - ``` - # haven -Version: 2.0.0 - -## In both - -* checking for GNU extensions in Makefiles ... NOTE - ``` - GNU make is a SystemRequirements. - ``` - -# idealstan - -Version: 0.5.1 - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 6.2Mb - sub-directories of 1Mb or more: - libs 4.1Mb - ``` - -* checking for GNU extensions in Makefiles ... NOTE - ``` - GNU make is a SystemRequirements. - ``` - -# iotables - -Version: 0.4.2 - -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 53206 marked UTF-8 strings - ``` - -# konfound - -Version: 0.1.1 - -## In both - -* checking re-building of vignette outputs ... WARNING - ``` - Error in re-building vignettes: - ... - Quitting from lines 50-51 (introduction-to-konfound.Rmd) - Error: processing vignette 'introduction-to-konfound.Rmd' failed with diagnostics: - there is no package called 'devtools' - Execution halted - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘devtools’ - ``` - -# MetamapsDB - -Version: 0.0.2 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘Matrix’ ‘shiny’ - All declared Imports should be used. - ``` - -# noaastormevents - -Version: 0.1.0 - -## In both - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘hurricaneexposuredata’ - ``` - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘RColorBrewer’ ‘XML’ ‘choroplethr’ ‘choroplethrMaps’ ‘data.table’ - ‘forcats’ ‘hurricaneexposure’ ‘plyr’ - All declared Imports should be used. - ``` - -# nzelect - -Version: 0.4.0 - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 5.4Mb - sub-directories of 1Mb or more: - data 5.0Mb - ``` - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 6409 marked UTF-8 strings - ``` - -# phenopath - -Version: 1.6.0 - -## In both - -* checking re-building of vignette outputs ... WARNING - ``` - Error in re-building vignettes: - ... - Quitting from lines 64-72 (introduction_to_phenopath.Rmd) - Error: processing vignette 'introduction_to_phenopath.Rmd' failed with diagnostics: - Columns 1, 2, 3, 4, 5, … (and 3 more) must be named. - Use .name_repair to specify repair. - Execution halted - ``` - -# plotly - -Version: 4.8.0 - -## In both - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘devtools’ - ``` - -* checking installed package size ... NOTE - ``` - installed size is 7.0Mb - sub-directories of 1Mb or more: - R 2.3Mb - htmlwidgets 3.1Mb - ``` - -# processmapR - -Version: 0.3.2 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘viridis’ - All declared Imports should be used. - ``` - -# questionr - -Version: 0.7.0 +
-## In both - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘Hmisc’ - ``` - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 4145 marked UTF-8 strings - ``` - -# railtrails - -Version: 0.1.1 - -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 1557 marked UTF-8 strings - ``` - -# rbin +* Version: 2.2.0 +* Source code: https://github.com/cran/haven +* URL: http://haven.tidyverse.org, https://github.com/tidyverse/haven, https://github.com/WizardMac/ReadStat +* BugReports: https://github.com/tidyverse/haven/issues +* Date/Publication: 2019-11-08 06:20:22 UTC +* Number of recursive dependencies: 59 -Version: 0.1.1 +Run `revdep_details(,"haven")` for more info -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘utils’ - All declared Imports should be used. - ``` - -# SCnorm - -Version: 1.4.5 - -## In both +
-* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘devtools’ - ``` - -# sweep - -Version: 0.2.1.1 - -## In both - -* checking package dependencies ... ERROR - ``` - Package required but not available: ‘devtools’ - - See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ - manual. - ``` - -# TextForecast - -Version: 0.1.0 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘doParallel’ ‘forecast’ ‘lars’ ‘parallel’ ‘tau’ ‘tsDyn’ - All declared Imports should be used. - ``` - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 40 marked UTF-8 strings - ``` - -# tidybayes - -Version: 1.0.3 - -## In both +## Newly broken * checking tests ... ``` ERROR Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: - 9: setup.jagsfile(model = model, n.chains = n.chains, data = data, inits = inits, monitor = monitor, modules = modules, - factories = factories, jags = jags, call.setup = TRUE, method = method, mutate = mutate) - 10: setup.jags(model = outmodel, monitor = outmonitor, data = outdata, n.chains = n.chains, inits = outinits, modules = modules, - factories = factories, response = response, fitted = fitted, residual = residual, jags = jags, method = method, - mutate = mutate) - 11: loadandcheckrjags() - 12: stop("Loading the rjags package failed (diagnostics are given above this error message)", call. = FALSE) + > library(testthat) + > library(haven) + > + > test_check("haven") + ── 1. Failure: leaves factors unchanged (@test-as-factor.R#7)  ──────────────────────────────────────────────────── + as_factor(f) not equal to `f`. + Attributes: < Component "class": Lengths (1, 2) differ (string compare on first 1) > + Attributes: < Component "class": 1 string mismatch > - ══ testthat results ═════════════════════════════════════════════════════════════════════════════════════ - OK: 218 SKIPPED: 43 FAILED: 2 - 1. Failure: groups from spread_draws retain factor level names (@test.spread_draws.R#251) - 2. Error: tidy_draws works with runjags (@test.tidy_draws.R#87) + ══ testthat results ══════════════════════════════════════════════════════════════════════════════════════════════ + [ OK: 269 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] + 1. Failure: leaves factors unchanged (@test-as-factor.R#7) Error: testthat unit tests failed Execution halted ``` -# tidyLPA - -Version: 0.2.4 - -## In both - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘devtools’ - ``` - -# tidyverse - -Version: 1.2.1 - ## In both -* checking dependencies in R code ... NOTE +* checking Rd cross-references ... NOTE ``` - Namespaces in Imports field not imported from: - ‘dbplyr’ ‘reprex’ ‘rlang’ - All declared Imports should be used. + Package unavailable to check Rd xrefs: ‘dplyr’ ``` -# timetk - -Version: 0.1.1.1 - -## In both - -* checking package dependencies ... ERROR +* checking for GNU extensions in Makefiles ... NOTE ``` - Package required but not available: ‘devtools’ - - See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ - manual. + GNU make is a SystemRequirements. ```