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This repository has been archived by the owner on Oct 15, 2020. It is now read-only.
We may also want to consider some of the Hail 0.1 features (import_bgen) that disregard calls where sum of genotype probabilities is over some threshold distance from 1. It also normalizes probabilities to sum to 1 -- though I'm confused on how that works if bgen stores all but 1 genotype probability. These features may only apply to version 1 of the bgen spec.
The text was updated successfully, but these errors were encountered:
eric-czech
changed the title
Add flags to return genotype probabilities, hard calls, and/or dosages
Return genotype probabilities and dosages
Aug 23, 2020
We may also want to consider some of the Hail 0.1 features (import_bgen) that disregard calls where sum of genotype probabilities is over some threshold distance from 1. It also normalizes probabilities to sum to 1 -- though I'm confused on how that works if bgen stores all but 1 genotype probability. These features may only apply to version 1 of the bgen spec.
The text was updated successfully, but these errors were encountered: