Skip to content
This repository has been archived by the owner on Oct 15, 2020. It is now read-only.

Return genotype probabilities and dosages #13

Open
eric-czech opened this issue Aug 22, 2020 · 0 comments
Open

Return genotype probabilities and dosages #13

eric-czech opened this issue Aug 22, 2020 · 0 comments

Comments

@eric-czech
Copy link
Collaborator

eric-czech commented Aug 22, 2020

We may also want to consider some of the Hail 0.1 features (import_bgen) that disregard calls where sum of genotype probabilities is over some threshold distance from 1. It also normalizes probabilities to sum to 1 -- though I'm confused on how that works if bgen stores all but 1 genotype probability. These features may only apply to version 1 of the bgen spec.

@eric-czech eric-czech changed the title Add flags to return genotype probabilities, hard calls, and/or dosages Return genotype probabilities and dosages Aug 23, 2020
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant