From 5b565652f1777c4a6bd87a8a28fbab6c6ed74639 Mon Sep 17 00:00:00 2001
From: Rafal Wojdyla <ravwojdyla@gmail.com>
Date: Mon, 29 Apr 2024 19:40:06 +0900
Subject: [PATCH] Add CI workflow: lint + test

---
 .github/workflows/ci.yml   | 34 ++++++++++++++++++++++++++++++++++
 .github/workflows/lint.yml | 17 -----------------
 README.md                  |  2 ++
 3 files changed, 36 insertions(+), 17 deletions(-)
 create mode 100644 .github/workflows/ci.yml
 delete mode 100644 .github/workflows/lint.yml

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
new file mode 100644
index 0000000..fdb7032
--- /dev/null
+++ b/.github/workflows/ci.yml
@@ -0,0 +1,34 @@
+name: CI
+
+on:
+  pull_request:
+  push:
+    branches: [main, test]
+
+jobs:
+  pre-commit:
+    name: Lint
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+      - uses: pre-commit/action@v3.0.1
+  test:
+    name: Test
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11"]
+    steps:
+      - uses: actions/checkout@v4
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install '.[dev]'
+      - run: pytest
diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml
deleted file mode 100644
index 064d6fe..0000000
--- a/.github/workflows/lint.yml
+++ /dev/null
@@ -1,17 +0,0 @@
-name: Lint
-
-on:
-  pull_request:
-  push:
-    branches: [main, test]
-
-jobs:
-  pre-commit:
-    name: Lint
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v4
-        with:
-          python-version: '3.11'
-      - uses: pre-commit/action@v3.0.1
diff --git a/README.md b/README.md
index 2125f85..3ffbc2c 100644
--- a/README.md
+++ b/README.md
@@ -1,3 +1,5 @@
+[![CI](https://github.com/sgkit-dev/bio2zarr/actions/workflows/ci.yml/badge.svg?branch=main)](https://github.com/sgkit-dev/bio2zarr/actions/workflows/ci.yml)
+
 # bio2zarr
 Convert bioinformatics file formats to Zarr