From f1ca6f74e8a4b033d8eab3148ff5830577f18a56 Mon Sep 17 00:00:00 2001
From: Phil Schaf <flying-sheep@web.de>
Date: Tue, 14 Jan 2025 13:28:55 +0100
Subject: [PATCH] Almost fix docs

---
 docs/conf.py                   | 4 +++-
 docs/fileformat-prose.md       | 2 +-
 src/anndata/abc.py             | 2 +-
 src/anndata/compat/__init__.py | 4 ++--
 4 files changed, 7 insertions(+), 5 deletions(-)

diff --git a/docs/conf.py b/docs/conf.py
index 03d9c8b20..9810b1842 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -132,7 +132,7 @@ def setup(app: Sphinx):
     python=("https://docs.python.org/3", None),
     scipy=("https://docs.scipy.org/doc/scipy", None),
     sklearn=("https://scikit-learn.org/stable", None),
-    zarr=("https://zarr.readthedocs.io/en/v2.18.4/", None),
+    zarr=("https://zarr.readthedocs.io/en/stable/", None),
     xarray=("https://docs.xarray.dev/en/stable", None),
     dask=("https://docs.dask.org/en/stable", None),
 )
@@ -145,6 +145,8 @@ def setup(app: Sphinx):
     "anndata._types.WriteCallback": "anndata.experimental.WriteCallback",
     "anndata._types.Read": "anndata.experimental.Read",
     "anndata._types.Write": "anndata.experimental.Write",
+    "zarr.core.array.Array": "zarr.Array",
+    "zarr.core.group.Group": "zarr.Group",
 }
 autodoc_type_aliases = dict(
     NDArray=":data:`~numpy.typing.NDArray`",
diff --git a/docs/fileformat-prose.md b/docs/fileformat-prose.md
index 831b441e9..4245103ac 100644
--- a/docs/fileformat-prose.md
+++ b/docs/fileformat-prose.md
@@ -91,7 +91,7 @@ Using this information, we're able to dispatch onto readers for the different el
 ## Dense arrays
 
 Dense numeric arrays have the most simple representation on disk,
-as they have native equivalents in H5py {doc}`h5py:high/dataset` and Zarr {ref}`Arrays <zarr:tutorial_create>`.
+as they have native equivalents in H5py {doc}`h5py:high/dataset` and Zarr {doc}`Arrays <zarr:user-guide/arrays>`.
 We can see an example of this with dimensionality reductions stored in the `obsm` group:
 
 `````{tab-set}
diff --git a/src/anndata/abc.py b/src/anndata/abc.py
index df8c8a6e8..b0706210b 100644
--- a/src/anndata/abc.py
+++ b/src/anndata/abc.py
@@ -57,7 +57,7 @@ def to_memory(self) -> csr_matrix | csc_matrix | SpArray:
 _sparse_dataset_doc = """\
 On disk {format} sparse matrix.
 
-Analogous to :class:`h5py.Dataset` or :class:`zarr.core.Array`, but for sparse matrices.
+Analogous to :class:`h5py.Dataset` or :class:`zarr.Array`, but for sparse matrices.
 """
 
 
diff --git a/src/anndata/compat/__init__.py b/src/anndata/compat/__init__.py
index 23acad98c..1701e410f 100644
--- a/src/anndata/compat/__init__.py
+++ b/src/anndata/compat/__init__.py
@@ -98,12 +98,12 @@ def __exit__(self, *_exc_info) -> None:
     class ZarrArray:
         @staticmethod
         def __repr__():
-            return "mock zarr.core.Array"
+            return "mock zarr.Array"
 
     class ZarrGroup:
         @staticmethod
         def __repr__():
-            return "mock zarr.core.Group"
+            return "mock zarr.Group"
 
 
 @cache