Mountain Lion using Intel

Building ZLib

• Version 1.2.8

    CC=icc CXX=icpc CFLAGS=-O3 CXXFLAGS=-O3 ./configure --archs=-arch x86_64 --prefix=/usr/local/intel
    make -j 4
    make install
  

Building HDF5

• Version 1.8.11

    ./configure CC=mpicc FC=mpif90 CXX=mpicxx CXXFLAGS="-fPIC -O3" CFLAGS="-fPIC -O3" FCFLAGS="-fPIC -O3" --enable-parallel --with-zlib=/usr/local/intel -prefix=/usr/local/intel/parallel
    make -j 4
    make install
  

Building Netcdf

• Version 4.3.0

    ./configure --prefix=/usr/local/intel/parallel CC=mpicc FC=mpif90 CXX=mpicxx CFLAGS="-I/usr/local/intel/parallel/include -O3" LDFLAGS=-L/usr/local/intel/parallel/lib --disable-fsync --disable-cdmremote --disable-dap --disable-shared --disable-doxygen
    make -j 4 
    make install
  

Building boost

• Version 1.55.0

• First, prepare your $HOME/user-config.jam file:

    using mpi : /opt/intel/bin/mpicxx ;
    using intel-darwin : /opt/intel/bin/icpc ;
  

• Now, build boost with the commands

    ./bootstrap.sh --with-toolset=intel-darwin --with-libraries=signals,regex,filesystem,system,mpi,serialization,thread,program_options --prefix=/usr/local/intel
    ./bjam install
  

• The above bjam command gave me an error, so I removed the following lines from project-config.jam:

    if ! intel-darwin in [ feature.values <toolset> ]
    {
    	using intel-darwin ;
    }
  

Building ParMetis

• Version 4.0.3

• Edit metis.h to use an IDXTYPEWIDTH of 64

    cd parmetis-4.0.3/metis/include
    vi metis.h
    #define IDXTYPEWIDTH 64
  

• Run CMake to build metis

    cd /usr/local/src/parmetis-4.0.3/metis
    mkdir build
    cd build
    export metis=/usr/local/src/parmetis-4.0.3/metis
    cmake \
    -DCMAKE_INSTALL_PREFIX=/usr/local/intel/parmetis-4.0.3 \
    -DMETIS_PATH=$metis \
    -DGKLIB_PATH=$metis/GKlib \
    -DCMAKE_C_COMPILER=mpicc \
    -DCMAKE_CXX_COMPILER=mpicxx \
    ..
    make -j 4
    make install
  

• Run CMake to build parmetis

    cd /usr/local/src/parmetis-4.0.3 
    mkdir builddir
    cd builddir
    export metis=/usr/local/src/parmetis-4.0.3/metis/  
    cmake \
    -DCMAKE_INSTALL_PREFIX=/usr/local/intel/parmetis-4.0.3 \
    -DMETIS_PATH=$metis \
    -DGKLIB_PATH=$metis/GKlib \
    -DCMAKE_C_COMPILER=mpicc \
    -DCMAKE_CXX_COMPILER=mpicxx \
    ..
    make -j 4
    make install
  

SuperLU

• Version 4.3

• Build paths

    mkdir /usr/local/intel/SuperLU_4.3
    mkdir /usr/local/intel/SuperLU_4.3/include
    mkdir /usr/local/intel/SuperLU_4.3/lib
  

• Edit make.inc for your machine and environment

    PLAT = _lion
    SuperLUroot = /usr/local/intel/SuperLU_4.3
    SUPERLULIB      = $(SuperLUroot)/lib/libsuperlu_4.3.a
    TMGLIB          = libtmglib.a
    BLASDEF     = -DUSE_VENDOR_BLAS
    BLASLIB     = -L/opt/intel/mkl/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core
    LIBS        = $(SUPERLULIB) $(BLASLIB)
    ARCH         = ar
    ARCHFLAGS    = cr
    RANLIB       = ranlib
    CC           = icc
    CFLAGS       = -ftz -O3
    NOOPTS       =
    FORTRAN      = ifort
    FFLAGS       = -ftz -O3
    LOADER       = $(CC)
    LOADOPTS     =
    CDEFS        = -DAdd_
    MATLAB       = /usr/sww/matlab
  

• Build SuperLU

    make -j 4
    cd SRC
    cp *.h /usr/local/intel/SuperLU_4.3/include