diff --git a/requirements.txt b/requirements.txt index 3ad5d85..144bfc9 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,37 +1,144 @@ anndata==0.10.9 +anndata2ri==1.3.2 +anyio==4.4.0 +argon2-cffi==23.1.0 +argon2-cffi-bindings==21.2.0 +cffi==1.17.1 array_api_compat==1.8 +arrow==1.3.0 +asttokens==2.4.1 +async-lru==2.0.4 +attrs==24.2.0 +babel==2.16.0 +beautifulsoup4==4.12.3 +bleach==6.1.0 +certifi==2024.8.30 +cffi==1.17.0 +charset-normalizer==3.3.2 +click==8.1.7 +comm==0.2.2 contourpy==1.3.0 cycler==0.12.1 +debugpy==1.8.5 +decorator==5.1.1 +defusedxml==0.7.1 +executing==2.1.0 +fastjsonschema==2.20.0 fonttools==4.53.1 +fqdn==1.5.1 +greenlet==3.0.3 +h11==0.14.0 h5py==3.11.0 +httpcore==1.0.5 +httpx==0.27.2 +idna==3.8 +importlib_metadata==8.4.0 +ipykernel==6.29.5 +ipython==8.27.0 +ipywidgets==8.1.5 +isoduration==20.11.0 +jedi==0.19.1 +Jinja2==3.1.4 joblib==1.4.2 -kiwisolver==1.4.7 +json5==0.9.25 +jsonpointer==3.0.0 +jsonschema==4.23.0 +jsonschema-specifications==2023.12.1 +jupyter==1.1.1 +jupyter-cache==1.0.0 +jupyter-console==6.6.3 +jupyter-events==0.10.0 +jupyter-lsp==2.2.5 +jupyter_client==8.6.2 +jupyter_core==5.7.2 +jupyter_server==2.14.2 +jupyter_server_terminals==0.5.3 +jupyterlab==4.2.5 +jupyterlab_pygments==0.3.0 +jupyterlab_server==2.27.3 +jupyterlab_widgets==3.0.13 +kiwisolver==1.4.5 legacy-api-wrap==1.4 llvmlite==0.43.0 +markdown-it-py==3.0.0 +MarkupSafe==2.1.5 matplotlib==3.9.2 +matplotlib-inline==0.1.7 +mdurl==0.1.2 +mistune==3.0.2 +mudata==0.3.1 natsort==8.4.0 +nbclient==0.10.0 +nbconvert==7.16.4 +nbformat==5.10.4 +nest-asyncio==1.6.0 networkx==3.3 +notebook==7.2.2 +notebook_shim==0.2.4 numba==0.60.0 numpy==1.26.4 +overrides==7.7.0 packaging==24.1 pandas==2.2.2 +pandocfilters==1.5.1 +parso==0.8.4 patsy==0.5.6 +pexpect==4.9.0 pillow==10.4.0 +platformdirs==4.2.2 +prometheus_client==0.20.0 +prompt_toolkit==3.0.47 +psutil==6.0.0 +ptyprocess==0.7.0 +pure_eval==0.2.3 +pycparser==2.22 +Pygments==2.18.0 pynndescent==0.5.13 pyparsing==3.1.4 python-dateutil==2.9.0.post0 +python-json-logger==2.0.7 pytz==2024.1 +PyYAML==6.0.2 +pyzmq==26.2.0 +referencing==0.35.1 +requests==2.32.3 +rfc3339-validator==0.1.4 +rfc3986-validator==0.1.1 +rich==13.7.1 +rpds-py==0.20.0 +rpy2==3.5.16 scanpy==1.10.2 scikit-learn==1.5.1 scipy==1.14.1 seaborn==0.13.2 +Send2Trash==1.8.3 session_info==1.0.0 -setuptools==74.1.1 +setuptools==74.1.0 six==1.16.0 +sniffio==1.3.1 +soupsieve==2.6 +SQLAlchemy==2.0.32 +stack-data==0.6.3 statsmodels==0.14.2 stdlib-list==0.10.0 +tabulate==0.9.0 +terminado==0.18.1 threadpoolctl==3.5.0 +tinycss2==1.3.0 +tornado==6.4.1 tqdm==4.66.5 +traitlets==5.14.3 +types-python-dateutil==2.9.0.20240821 +typing_extensions==4.12.2 tzdata==2024.1 +tzlocal==5.2 umap-learn==0.5.6 +uri-template==1.3.0 +urllib3==2.2.2 +wcwidth==0.2.13 +webcolors==24.8.0 +webencodings==0.5.1 +websocket-client==1.8.0 wheel==0.44.0 +widgetsnbextension==4.0.13 +zipp==3.20.1 \ No newline at end of file