test-projects.bsh

/**
 * Tests a series of projects for presence of all images
 * Call
 *
 * xvfb-run ./ImageJ-linux64 -Ddir=<projects directory> -Dstart=<first index> -Dend=<last index> -Doverlap=<overlap size> -- --no-splash test-projects.bsh
 * 
 * @author Stephan Saalfeld <saalfeld@mpi-cbg.de>
 */

import ini.trakem2.ControlWindow;
import ini.trakem2.Project;
import ini.trakem2.display.Layer;
import ini.trakem2.display.Patch;
import java.util.ArrayList;

runtime = Runtime.getRuntime();
System.out.println( runtime.availableProcessors() + " cores available for multi-threading" );

dir = System.getProperty("dir");
start = Integer.parseInt(System.getProperty("start"));
end = Integer.parseInt(System.getProperty("end"));
overlap = Integer.parseInt(System.getProperty("overlap"));

ControlWindow.setGUIEnabled(false);

for (int a = start; a < end - 2 * overlap; a += overlap) {
	range = a + "-" + (a + 2 * overlap - 1);
	System.out.println("range: " + range);
	
	/* load new project */
	project = Project.openFSProject(dir + "/" + range + "/project.xml", false);
	layerset = project.getRootLayerSet();
	
	/* scan through layers */
	for (layer : layerset.getLayers()) {
		patches = layer.getDisplayables(Patch.class);
		if (patches.size() < 1)
			System.out.println("  " + layer.getZ() + " missing");
	}
	project.destroy();
}

/* shutdown */
runtime.exit(0);