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README
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Metaproject for RDP Tools
This project includes the core modules from the RDP (Classifier, Clustering, SequenceMatch, ProbeMatch, InitialProcessing, FrameBot, ReadSeq) and all their dependencies. After cloning this repository enter the commands
## Initial Project Set Up
$ git submodule init
$ git submodule update
then type 'make'
Jars are placed in the main directory, you can run them with
java -jar classifier.jar|Clustering.jar|...
Building depends on 'make' and 'ant'.
## Update Existing Project
$ git pull
$ git submodule update
$ make clean
$ make
## Usage
The RDP Paired-end Reads Assembler used in the publication (Cole et al., 2014 Nucl. Acids Res.) is available at http://rdp.cme.msu.edu/misc/resources.jsp
See each individual tool page or fungene_pipeline (https://github.com/rdpstaff/fungene_pipeline) to run one or multiple tools.