New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

QC for GorillaGhost_5P23 (GorGor) #1660

Open

petrelharp opened this issue Jan 20, 2025 · 0 comments

Labels

Model QC

Contributor

petrelharp commented Jan 20, 2025 •

edited

Loading

PR for new model: #1517
Original paper: https://doi.org/10.1038/s41559-023-02145-2
Parameter values: Fig. 2A and Supp. Table 1
Population indices:

Contemporary Cross River Gorillas
Contemporary Western Lowland Gorillas
Contemporary Eastern Lowland Gorillas
Contemporary Mountain Gorillas
Extinct ghost lineage

Potential issues that might lead to differences between the model implementations:

The effective population size of the extinct ghost population is
difficult to estmiate due to the low admixture proportion into Eastern
Gorillas. Here, it is somewhat arbitrarly set to 25,000 individuals.
See also: https://github.com/h-pawar/gor_ghost_introg/blob/main/4.Demog_ABC_model_comparison/4.1.model_comparison_simulations/scripts/mc.ghoste.12apr22.R

QC'er requests: {tag potential developers to QC the model}

Fig 2:

Supp Table 1:

petrelharp added the Model QC label

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment