Open Problems in Single-Cell Analysis

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28 packages

methods/scprint
Published Dec 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_denoising

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metrics/spectral_distance_correlation
Published Dec 18, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

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data_processors/process_embedding
Published Dec 18, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

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methods_segmentation/binning
Published Dec 3, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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datasets/processors/crop_region
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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core/fetch_task_execution
Published Oct 1, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods_segmentation/cellpose
Published Nov 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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datasets/loaders/vizgen_merscope
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods_transcript_assignment/pciseq_transcript_assignment
Published Dec 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

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methods/novel_train
Published Jan 8, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

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methods/simple_mlp_predict
Published Jan 9, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

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methods/simple_mlp_train
Published Jan 9, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

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methods/novel_predict
Published Jan 8, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_predict_modality

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methods/scgpt_fine_tuned
Published Jan 17, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

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methods/scgpt_zero_shot
Published Dec 16, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

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control_methods/shuffle_integration_by_cell_type
Published Dec 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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control_methods/shuffle_integration_by_batch
Published Dec 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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methods/limma_remove_batch_effect
Published Dec 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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control_methods/shuffle_integration
Published Dec 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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methods/harmonypy
Published Dec 4, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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metrics/emd_per_samples
Published Dec 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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data_processors/process_dataset
Published Nov 5, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

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exp_analysis/gene_annotation
Published Sep 27, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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preprocessing/process_opsca
Published Nov 20, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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metrics/ws_distance
Published Jan 22, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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grn_methods/figr
Published Nov 28, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

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methods/geneformer
Published Jan 6, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

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methods/scprint
Published Jan 6, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_label_projection

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