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    32 repositories

    • Icy_Bioimager_IAV_NP_Nuclear_Intensity_analysis

      Public
      0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

    • single_particle_event_analysis

      Public
      Script for analysis of single-viral particle fusion event videos. Videos have to be pre-analysed in Fiji Spot Intensity Analysis plugin and the resulting .csv file is used for this analysis.
      Jupyter Notebook
      •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

    • Jamel

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • micrograph-spot-analysis

      Public
      MATLAB
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

    • covid19-epi

      Public
      Individual-based epidemiological modeling for COVID-19
      C
      •
      GNU Lesser General Public License v2.1
      •5•5•1•2•Updated Sep 29, 2023Sep 29, 2023

    • brer-md

      Public
      Python package for running bias-resampling ensemble refinement (BRER) simulations.
      Python
      •
      GNU Lesser General Public License v2.1
      •0•1•18•1•Updated May 9, 2023May 9, 2023

    • gmxapi

      Public
      (outdated) fork of https://gitlab.com/gromacs/gromacs
      C++
      •
      Other
      •13•53•93•2•Updated Apr 27, 2023Apr 27, 2023

    • coronavirus-chimera-prediction

      Public
      Code for generating and predicting coronavirus chimeras
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Feb 1, 2023Feb 1, 2023

    • mRMR-DEER

      Public
      selection of residues for DEER spectroscopy using mRMR feature selection
      Python
      •2•0•0•0•Updated Jan 4, 2023Jan 4, 2023

    • lipid-converter

      Public
      GNU Lesser General Public License v2.1
      •0•0•0•0•Updated Oct 22, 2022Oct 22, 2022

    • run_brer

      Public
      Python package for running bias-resampling ensemble refinement (BRER) simulations
      Python
      •
      GNU Lesser General Public License v2.1
      •3•0•3•1•Updated Oct 10, 2022Oct 10, 2022

    • brer_plugin

      Public
      C++
      •2•0•0•0•Updated Sep 20, 2022Sep 20, 2022

    • gmxapi-tutorials

      Public
      Python examples and tutorial material for gmxapi 0.3 on GROMACS 2022
      Jupyter Notebook
      •
      MIT License
      •4•9•2•0•Updated Jun 7, 2022Jun 7, 2022

    • gmxapi-scripts

      Public
      Python
      •1•2•2•0•Updated Jan 27, 2022Jan 27, 2022

    • porin_permeation

      Public
      Python
      •
      GNU Lesser General Public License v2.1
      •0•0•0•0•Updated May 24, 2021May 24, 2021

    • correlation_structure

      Public
      Package for estimating correlation structure in distributional data using MD simulation
      Python
      •
      GNU Lesser General Public License v2.1
      •0•0•0•1•Updated Feb 26, 2021Feb 26, 2021

    • Syntaxin-EESM-Analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 24, 2021Feb 24, 2021

    • sample_restraint

      Public
      C++
      •3•0•1•5•Updated Feb 11, 2021Feb 11, 2021

    • singularity-brer

      Public
      Singularity recipe that can be used to build a container for BRER simulations.
      GNU Lesser General Public License v2.1
      •1•0•0•0•Updated Jul 9, 2020Jul 9, 2020

    • zika-kinetics

      Public
      Python
      •0•0•0•0•Updated Mar 22, 2020Mar 22, 2020

    • fusion-shape-analysis

      Public
      C++
      •
      GNU Lesser General Public License v2.1
      •0•0•0•0•Updated Mar 5, 2020Mar 5, 2020

    • sterol_analysis

      Public
      code corresponding to Zawada et al., 2016
      Python
      •
      GNU Lesser General Public License v2.1
      •0•0•0•0•Updated Mar 2, 2020Mar 2, 2020

    • flavivirus-cellular-automaton

      Public
      Cellular automaton model for flavivirus membrane fusion
      MATLAB
      •
      GNU Lesser General Public License v2.1
      •0•0•0•0•Updated Oct 12, 2019Oct 12, 2019

    • gromacs-gmxapi

      Public
      Forked from the canonical GROMACS distribution, this repository supports the latests and greatest features of gmxapi that are not otherwise available.
      C++
      •
      Other
      •3•1•1•1•Updated Sep 25, 2019Sep 25, 2019

    • fusionmodel

      Public
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jul 10, 2019Jul 10, 2019

    • keras_bn_library

      Public
      keras extended library
      Python
      •
      MIT License
      •10•0•0•0•Updated Feb 19, 2019Feb 19, 2019

    • restrained-ensemble

      Public
      Modified version of restrained-ensemble simulation from https://pubs.acs.org/doi/abs/10.1021/jp3110369
      C++
      •0•0•0•0•Updated Nov 28, 2018Nov 28, 2018

    • SCALE-MS

      Public
      NSF Award 1835449
      1•0•0•0•Updated Nov 24, 2018Nov 24, 2018

    • MIMatrix

      Public
      C++/OpenMP code for fast calculation of mutual information matrix
      C
      •1•0•0•0•Updated Apr 13, 2018Apr 13, 2018

    • copernicus-images

      Public
      Shell
      •0•0•0•0•Updated Jun 14, 2017Jun 14, 2017